View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12122_high_3 (Length: 378)
Name: NF12122_high_3
Description: NF12122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12122_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 31933447 - 31933696
Alignment:
| Q |
1 |
attgtaaataagtattatatgtacatattaatgaatattgttaggttgtatgtgtgtagtccaaaggatgcatggtacagcctactgcagagtggttgga |
100 |
Q |
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| T |
31933447 |
attgtaaataagtattatatgtacatattaatgaatattgttaggttgtatgtgtgtagtccaaatgatgcatggtgcagcctactgcagagtggttggg |
31933546 |
T |
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| Q |
101 |
ttaagagagaattatttatttcttgggaaaataaatttaaatcgagagtagtttttgagaatcgagagtgatgttgtggtcagttctatgatgatg-cgt |
199 |
Q |
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| T |
31933547 |
ttaagagagaattatttatttcttgggaaaataaatttaaatcgagagtagtttttgagaatcgagagtgatgttgtggtcagttctatgatgatgtcgt |
31933646 |
T |
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| Q |
200 |
ttttgagattgggttaggtttggatagtattgttgttgtaattgagtttt |
249 |
Q |
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| T |
31933647 |
ttttgagattgggttaggtttggatagtattgttgttgtaattgggtttt |
31933696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 31864550 - 31864635
Alignment:
| Q |
64 |
aaggatgcatggtacagcctactgcagagtggttggattaagagagaattatttatttcttgggaaaataaatttaaatcgagagt |
149 |
Q |
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| T |
31864550 |
aaggatgcatggtgcaacctactgtaaagtggttggattaagagagaattatttatgtcttaagaaaataaatttcaatcaagagt |
31864635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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