View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12122_high_5 (Length: 269)

Name: NF12122_high_5
Description: NF12122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12122_high_5
NF12122_high_5
[»] chr2 (1 HSPs)
chr2 (13-247)||(5811418-5811649)
[»] chr7 (4 HSPs)
chr7 (13-100)||(38602054-38602141)
chr7 (16-100)||(37742995-37743079)
chr7 (13-100)||(37758427-37758514)
chr7 (13-100)||(37764175-37764262)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 5811418 - 5811649
Alignment:
Q  13 gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaacacatgattaata 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5811418 gaacctgtgagacacttccaaactgactgaaatactcttccagttcttcctccctgcaacataataacaataaaatgataaaaccaacacatgattaata 5811517  T
Q  113 tattaagatcaattgaaatgacaaaatcattgaaagatattagtaagataaaaaattaactatcagaagacatatttattcagtagaaaaataataaatg 212  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||    
T  5811518 tattaagat---ttgaaatgacaaaatcattgaaagatattagtaagataaaaaattaactgtcggaagacatattcattcagtagaaaaataataaatg 5811614  T
Q  213 gaaaagcaggaaaaacactatgaaagtacgtggtc 247  Q
    |||||||||||||||||||||||||||||||||||    
T  5811615 gaaaagcaggaaaaacactatgaaagtacgtggtc 5811649  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 38602141 - 38602054
Alignment:
Q  13 gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac 100  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||  |||||||||||    
T  38602141 gaacctgtgagacactgccaaactgactgaaatgctcttccagttcctcctcactgcaacagaataacaataaaaatataaaaccaac 38602054  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 37742995 - 37743079
Alignment:
Q  16 cctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac 100  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||| |||||||||||||  |||||||||||    
T  37742995 cctgtgagacactgccaaactgactgaaatgctcttccaattcctcctcactgcaacagaataacaataaaaatataaaaccaac 37743079  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 37758427 - 37758514
Alignment:
Q  13 gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac 100  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||   |||||||||||||  |||||||||||    
T  37758427 gaacctgtgagacactgccaaactgactgaaatgctcttcgagttcctcctcactgcaatggaataacaataaaaatataaaaccaac 37758514  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 37764175 - 37764262
Alignment:
Q  13 gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac 100  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||   |||||||||||||  |||||||||||    
T  37764175 gaacctgtgagacactgccaaactgactgaaatgctcttcgagttcctcctcactgcaatggaataacaataaaaatataaaaccaac 37764262  T

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