View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12122_low_1 (Length: 1007)
Name: NF12122_low_1
Description: NF12122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12122_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 597; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 362 - 990
Target Start/End: Complemental strand, 33446299 - 33445671
Alignment:
| Q |
362 |
cagcacggtagcacattataagctccagtccaggtcaccttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaa |
461 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33446299 |
cagcacgatagcacattataagctccagtccaggtcaccttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaa |
33446200 |
T |
|
| Q |
462 |
ctcgatcatgaggcctttcagaaagtattgaagtgtaacgagacaagaaagagacagtacaataatataaaggaatacaggcgttaaactatgtctatta |
561 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33446199 |
ctcgatcatgaggcctttcagaaagtatagaagtgtaacaagataagaaagagacagtacaataatataaaggaatacaggcgttaaactatgtctatta |
33446100 |
T |
|
| Q |
562 |
gttggttatcataccttttgggccctgaaacacaggattcaacttctcccaagtctaactgcaaattagatgtgtatactctctcatggtgagcctggat |
661 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33446099 |
gtcggttatcataccttttgggccctgaaacacaggattcaacttctcccaagtctaactgcaaattagatgtgtatactctctcatggtgagcctggat |
33446000 |
T |
|
| Q |
662 |
gacagagaagtctacatgaccttagatccacaacttccatcattatcatagagtactttttatcgaaaatagaaaatgttaccttgttacaattattgaa |
761 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33445999 |
gacagagaagtctacatgaccttagatccacaacttccatcattatcatagagtactttttatcgaaaatagaaaatgttaccttgttacaactattgaa |
33445900 |
T |
|
| Q |
762 |
caatctatttgcatataaatatgattttatcattgaaacctgaaagcaagtaaacatgattaaataataaattctatgaatgtgaaaataaaagaaaacc |
861 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33445899 |
caatctatttgcatataaatatgattttatcattgaaacctgaaagcaagtaaacatgattaaataataaattctatgaatgtgaaaataaaagaaaacc |
33445800 |
T |
|
| Q |
862 |
tttttcgagaaaaaatgtaagagaaagaatgtctaactgtctcttcactttttccggtcaatctaagatattccaatgtgacatcatctacagggaagaa |
961 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33445799 |
attttcgagaaaaaatgtaagagaaagaatgtctcactgtctcttcactttttccggtcaatctaagatattccaatgtgacatcatctacagggaagaa |
33445700 |
T |
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| Q |
962 |
ggccattgttgccccatattctggacaca |
990 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33445699 |
ggccattgttgccccatattctggacaca |
33445671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 33446643 - 33446358
Alignment:
| Q |
1 |
caacatatcaaaatgattgatgttatagttagactatctagccaatcggaatcgaaggtttg--tccaattttcattttgattttacatgtatgtgttga |
98 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
33446643 |
caacatatcaaaatgattgatattatagttagactatctagccaatcggaatcgaaggtttgcatccaaatttcattttga------------------- |
33446563 |
T |
|
| Q |
99 |
gagttgagactaacctccaaatctagttcacaggctttctttgcgacaagaccagcactaagcattgcactagggtttgatgtattagtacaacttgtaa |
198 |
Q |
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|| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33446562 |
gatttcagactaacctccaaacctagttcacaggctttctttgcgacaagaccagcactaagcattgcactagggtttgatgtattagtacaacttgtaa |
33446463 |
T |
|
| Q |
199 |
tggctgcgatgacaatacttccatgcttaaggttagcatgatgtccttggaaagaaaacttcacctctttatccttttctccttttgatatcccaaatcc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33446462 |
tggctgcgatgacaatacttccatgcttaaggttagcatgatgtccttggaaagaaaacttcacctctttatccttttctccttttgatatcccatatcc |
33446363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 406 - 471
Target Start/End: Original strand, 17040913 - 17040978
Alignment:
| Q |
406 |
tccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaactcgatcatg |
471 |
Q |
| |
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|||||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||||| ||||| |
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| T |
17040913 |
tccaactttgttatcaagacaagcatgccagtcagccttcatttctttcaaaggcactcggtcatg |
17040978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 28306927 - 28307003
Alignment:
| Q |
398 |
accttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaactcgatcatgagg |
474 |
Q |
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||||||| ||| |||||||| |||||||||| ||||||||| | |||||| ||||||||||| || ||||||||||| |
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| T |
28306927 |
accttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaaggcacccgatcatgagg |
28307003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 37235184 - 37235108
Alignment:
| Q |
398 |
accttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaactcgatcatgagg |
474 |
Q |
| |
|
||||||| ||| |||||||| |||||||||| ||||||||| | |||||| ||||||||||| || ||||||||||| |
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| T |
37235184 |
accttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaaggcacccgatcatgagg |
37235108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 28306150 - 28306211
Alignment:
| Q |
135 |
ttctttgcgacaagaccagcactaagcattgcactagggtttgatgtattagtacaacttgt |
196 |
Q |
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|||||||| ||||||||||| | |||||| |||| |||||||||||||| ||||||||||| |
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| T |
28306150 |
ttctttgcaacaagaccagctccaagcataacacttgggtttgatgtatttgtacaacttgt |
28306211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 37235961 - 37235900
Alignment:
| Q |
135 |
ttctttgcgacaagaccagcactaagcattgcactagggtttgatgtattagtacaacttgt |
196 |
Q |
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|||||||| ||||||||||| | |||||| |||| |||||||||||||| ||||||||||| |
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| T |
37235961 |
ttctttgcaacaagaccagctccaagcataacacttgggtttgatgtatttgtacaacttgt |
37235900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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