View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12122_low_2 (Length: 559)

Name: NF12122_low_2
Description: NF12122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12122_low_2
NF12122_low_2
[»] chr3 (4 HSPs)
chr3 (1-353)||(41953971-41954323)
chr3 (429-540)||(41954401-41954512)
chr3 (445-539)||(49722694-49722788)
chr3 (224-288)||(49722936-49723000)
[»] chr7 (2 HSPs)
chr7 (5-353)||(35707144-35707494)
chr7 (429-539)||(35706956-35707066)
[»] chr6 (4 HSPs)
chr6 (1-353)||(34222070-34222422)
chr6 (15-353)||(3340148-3340487)
chr6 (433-521)||(34222504-34222592)
chr6 (433-521)||(3339978-3340066)
[»] chr1 (2 HSPs)
chr1 (226-349)||(11777343-11777466)
chr1 (433-502)||(11777203-11777272)
[»] chr2 (1 HSPs)
chr2 (72-142)||(15009197-15009267)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 41953971 - 41954323
Alignment:
Q  1 aattacacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaatgcatcaacactgtccatcaactgatattgacaaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  41953971 aattacacatactatttgcagagaaatgtgaggacttataccaacaatcatatccaaataaccaatgcatcaacaatgtccatcaactgatattgacaaa 41954070  T
Q  101 ggaaatgtgagaatccacaatttttctttctatccagttacgagtcannnnnnnggcttcatcacgagcatttcgactataatcggtctcgatcttgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||       |||||||||||||||||||||||| |||| ||||||||||||||||    
T  41954071 ggaaatgtgagaatccacaatttttctttctatccagttacggatcatttttttggcttcatcacgagcatttcgactttaattggtctcgatcttgttt 41954170  T
Q  201 actatgtcacactgaataagcagcagttgataaaaggcaaatgaattgaagttaggagcagcctcataaagaactacacgccttatgttatatcaaacat 300  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  41954171 actatgtcacactgaataagcattagttgctaaaaggcaaatgaattgaagtcaggagcagcctcataaagaactacacgccttatgttataccaaacat 41954270  T
Q  301 caaaacttagctgacatacacacttaatacaaactaaacatgaatacaagatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41954271 caaaacttagctgacatacacacttaatacaaactaaacatgaatacaagatc 41954323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 429 - 540
Target Start/End: Original strand, 41954401 - 41954512
Alignment:
Q  429 gaaatagatcaaacaacaaatcaaccatggaggctttggtggtgggcaacaaagatctggatttggcggcacaatagacttcactgtagtggaggaaatg 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  41954401 gaaatagatcaaacaacaaatcaaccatggaggctttggtggtgggcaacaaagatctggatctggcggcacaataaacttcactgtagtggaggaaatg 41954500  T
Q  529 ggtggaggttcc 540  Q
    ||||||||||||    
T  41954501 ggtggaggttcc 41954512  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 539
Target Start/End: Complemental strand, 49722788 - 49722694
Alignment:
Q  445 caaatcaaccatggaggctttggtggtgggcaacaaagatctggatttggcggcacaatagacttcactgtagtggaggaaatgggtggaggttc 539  Q
    ||||||||||||||||||||||||||   || ||| ||||||||||  ||||||||||  |  ||||  | |||||||||| |||||||||||||    
T  49722788 caaatcaaccatggaggctttggtggcaagcgacacagatctggatccggcggcacaaatgcgttcatggaagtggaggaagtgggtggaggttc 49722694  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 49723000 - 49722936
Alignment:
Q  224 cagttgataaaaggcaaatgaattgaagttaggagcagcctcataaagaactacacgccttatgt 288  Q
    |||||||||||||||||| | ||||||||  |||||| |||| |||| ||||||||  |||||||    
T  49723000 cagttgataaaaggcaaaggtattgaagtggggagcatcctcgtaaaaaactacacaacttatgt 49722936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 5 - 353
Target Start/End: Complemental strand, 35707494 - 35707144
Alignment:
Q  5 acacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaatgcatcaacactgtccatcaactgatattgacaaaggaa 104  Q
    ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||  | ||||||||||||||||    
T  35707494 acacatattgtttgcagagaaatgtaaggacttaaaccaacaaccatatccaaataaccaatgcatcaacattgtccatccgcagatattgacaaaggaa 35707395  T
Q  105 atgtgagaatccacaatttttctttctatccagttacgagt--cannnnnnnggcttcatcacgagcatttcgactataatcggtctcgatcttgtttac 202  Q
    ||||||||||||||| | ||||||||||| |||||| |  |  ||       | |||||||||| |||||||||||||||| ||||| ||||||||||||    
T  35707394 atgtgagaatccacagtctttctttctattcagttatggatatcatgtttttgacttcatcacgcgcatttcgactataattggtcttgatcttgtttac 35707295  T
Q  203 tatgtcacactgaataagcagcagttgataaaaggcaaatgaattgaagttaggagcagcctcataaagaactacacgccttatgttatatcaaacatca 302  Q
    |||||| |||   ||||||| || ||||||||||||||||||| |||||| |||| || |||||||||||| | ||| |||||||||||| |||||||||    
T  35707294 tatgtcgcaccagataagcaacacttgataaaaggcaaatgaaatgaagtcaggaacaacctcataaagaattgcacaccttatgttataccaaacatca 35707195  T
Q  303 aaacttagctgacatacacacttaatacaaactaaacatgaatacaagatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35707194 aaacttagctgacatacacacttaatacaaactaaacatgaatacaagatc 35707144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 429 - 539
Target Start/End: Complemental strand, 35707066 - 35706956
Alignment:
Q  429 gaaatagatcaaacaacaaatcaaccatggaggctttggtggtgggcaacaaagatctggatttggcggcacaatagacttcactgtagtggaggaaatg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  35707066 gaaatagatcaaacaacaaatcaaccatggaggctttggtggtcggcaacatagatttggatctggcggcacaatagacttcactgcagtggaggaaatg 35706967  T
Q  529 ggtggaggttc 539  Q
    |||||||||||    
T  35706966 ggtggaggttc 35706956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 34222070 - 34222422
Alignment:
Q  1 aattacacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaatgcatcaacactgtccatcaactgatattgacaaa 100  Q
    |||||||||||   |||||||||| || |||||||||| |||||| ||||||||||||| || |||||||||||| |||||||| |||||||||||||||    
T  34222070 aattacacataaattttgcagagagatatgaggacttaaaccaactaccatatccaaataacgaatgcatcaacattgtccatccactgatattgacaaa 34222169  T
Q  101 ggaaatgtgagaatccacaatttttctttctatccagttacgagtcannnnnnnggcttcatcacgagcatttcgactataatcggtctcgatcttgttt 200  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||  |||       |||||||||||| |||||||||||||||| |||||||||||||||     
T  34222170 ggaaatgtgagaatccacaatctttctttctattcaggtacggatcatttttttggcttcatcacgcgcatttcgactataattggtctcgatcttgttc 34222269  T
Q  201 actatgtcacactgaataagcagcagttgataaaaggcaaatgaattgaagttaggagcagcctcataaagaactacacgccttatgttatatcaaacat 300  Q
    || ||||| ||||| ||||| | ||||||||||||||||||   | |||||| |||| ||||||||||| | ||| ||| |||||||| ||  |||||||    
T  34222270 accatgtcgcactggataagaaacagttgataaaaggcaaacagaatgaagtcaggaacagcctcataaggcactgcacaccttatgtgattccaaacat 34222369  T
Q  301 caaaacttagctgacatacacacttaatacaaactaaacatgaatacaagatc 353  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  34222370 caaaactcagctgacatacacacttaatacaaactaaacttgaatacaagatc 34222422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 3340487 - 3340148
Alignment:
Q  15 tttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaatgcatcaacactgtccatcaactgatattgacaaaggaaatgtgagaat 114  Q
    |||||||||| ||||||||||||| | |||| ||||||||||||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  3340487 tttgcagagagatgtgaggacttaaatcaactaccatatccaaataaccaatgcatcaacattgtccatccgctgatattgacaaaggaaatgtgagaat 3340388  T
Q  115 ccacaatttttctttctatccagttacgagtcannnnnnng-gcttcatcacgagcatttcgactataatcggtctcgatcttgtttactatgtcacact 213  Q
    ||||||| ||||||||||||||||||||  |||         ||||||||||| |||||||||||||||| ||||||||||||||| || ||||| |||     
T  3340387 ccacaatctttctttctatccagttacggatcattttttttagcttcatcacgcgcatttcgactataattggtctcgatcttgttcaccatgtcgcacc 3340288  T
Q  214 gaataagcagcagttgataaaaggcaaatgaattgaagttaggagcagcctcataaagaactacacgccttatgttatatcaaacatcaaaacttagctg 313  Q
      ||||| | ||||||||||||||||||   | |||||| |||| ||||||||||| | ||| ||| |||||||| ||  |||||||||||||| |||||    
T  3340287 agataagaaacagttgataaaaggcaaacataatgaagtcaggaacagcctcataaggcactgcacaccttatgtgattccaaacatcaaaactcagctg 3340188  T
Q  314 acatacacacttaatacaaactaaacatgaatacaagatc 353  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  3340187 acatacacacttaatacaaactaaacttgaatacaagatc 3340148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 433 - 521
Target Start/End: Original strand, 34222504 - 34222592
Alignment:
Q  433 tagatcaaacaacaaatcaaccatggaggctttggtggtgggcaacaaagatctggatttggcggcacaatagacttcactgtagtgga 521  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||  ||||||||||||||||||||||||| |||||| ||||||||    
T  34222504 tagatcaaacaacaaattaaccatggaggctttggtggtgagcgactcagatctggatttggcggcacaatagccttcacggtagtgga 34222592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 433 - 521
Target Start/End: Complemental strand, 3340066 - 3339978
Alignment:
Q  433 tagatcaaacaacaaatcaaccatggaggctttggtggtgggcaacaaagatctggatttggcggcacaatagacttcactgtagtgga 521  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| ||  |||||||||| |||| ||||||||| |||||| ||||||||    
T  3340066 tagatcaaacaacaaattaaccacggaggctttggtggtgggcgactcagatctggatctggcagcacaatagccttcacggtagtgga 3339978  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 349
Target Start/End: Complemental strand, 11777466 - 11777343
Alignment:
Q  226 gttgataaaaggcaaatgaattgaagttaggagcagcctcataaagaactacacgccttatgttatatcaaacatcaaaacttagctgacatacacactt 325  Q
    |||||||||||||||||| ||||||||  |||||| ||||||||| |||||||| |||||||| || || | |||||||||| || ||  ||||||||||    
T  11777466 gttgataaaaggcaaatgtattgaagtagggagcatcctcataaataactacacaccttatgtgatttctagcatcaaaactcagttgcgatacacactt 11777367  T
Q  326 aatacaaactaaacatgaatacaa 349  Q
    |||||||||||||| |||| ||||    
T  11777366 aatacaaactaaacttgaacacaa 11777343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 11777272 - 11777203
Alignment:
Q  433 tagatcaaacaacaaatcaaccatggaggctttggtggtgggcaacaaagatctggatttggcggcacaa 502  Q
    ||||||||||  |||||||||||||||| |||||||||| ||| ||| | |||| ||| |||| ||||||    
T  11777272 tagatcaaacggcaaatcaaccatggagactttggtggtaggcgacacatatctagatctggcagcacaa 11777203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 15009267 - 15009197
Alignment:
Q  72 aacactgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacg 142  Q
    |||||||||||||  |||||| |||||||| || |||||||||||||| |||||  |||||||||||||||    
T  15009267 aacactgtccatccgctgataatgacaaagtaattgtgagaatccacagttttttcttctatccagttacg 15009197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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