View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12122_low_3 (Length: 558)

Name: NF12122_low_3
Description: NF12122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12122_low_3
NF12122_low_3
[»] chr6 (5 HSPs)
chr6 (13-541)||(28138181-28138710)
chr6 (252-323)||(6982835-6982906)
chr6 (254-317)||(10501975-10502038)
chr6 (401-481)||(30587503-30587579)
chr6 (504-539)||(12466438-12466473)
[»] chr2 (10 HSPs)
chr2 (81-192)||(18559840-18559952)
chr2 (258-323)||(21949895-21949960)
chr2 (111-153)||(21950067-21950109)
chr2 (274-327)||(41411516-41411569)
chr2 (274-321)||(40275158-40275205)
chr2 (258-327)||(9446973-9447042)
chr2 (252-325)||(14555887-14555960)
chr2 (505-541)||(14096295-14096331)
chr2 (233-309)||(18559723-18559799)
chr2 (252-324)||(38346691-38346763)
[»] chr4 (5 HSPs)
chr4 (28-187)||(2048758-2048920)
chr4 (253-327)||(39735815-39735889)
chr4 (233-318)||(2048966-2049051)
chr4 (252-321)||(3958945-3959014)
chr4 (505-541)||(27292985-27293021)
[»] chr5 (5 HSPs)
chr5 (236-323)||(33417416-33417503)
chr5 (81-186)||(33417260-33417366)
chr5 (258-327)||(31610042-31610111)
chr5 (233-272)||(15867381-15867420)
chr5 (505-541)||(30624903-30624939)
[»] chr8 (5 HSPs)
chr8 (82-192)||(40715776-40715887)
chr8 (233-323)||(6596498-6596588)
chr8 (114-187)||(6596378-6596452)
chr8 (252-321)||(19168178-19168247)
chr8 (233-318)||(40715928-40716013)
[»] chr7 (8 HSPs)
chr7 (233-323)||(8308208-8308298)
chr7 (28-187)||(38835914-38836075)
chr7 (233-318)||(38836121-38836206)
chr7 (252-323)||(49094543-49094614)
chr7 (252-324)||(30559359-30559431)
chr7 (254-317)||(25862613-25862676)
chr7 (505-542)||(19436711-19436748)
chr7 (505-541)||(29834087-29834123)
[»] chr3 (3 HSPs)
chr3 (386-500)||(4292984-4293095)
chr3 (252-296)||(11536252-11536296)
chr3 (505-541)||(50650534-50650570)
[»] scaffold0098 (1 HSPs)
scaffold0098 (105-153)||(21800-21848)
[»] chr1 (6 HSPs)
chr1 (254-327)||(42080685-42080758)
chr1 (105-191)||(17937621-17937709)
chr1 (105-153)||(17867361-17867409)
chr1 (274-321)||(43403894-43403941)
chr1 (505-541)||(27286203-27286239)
chr1 (505-541)||(52385956-52385992)
[»] scaffold0141 (1 HSPs)
scaffold0141 (255-321)||(16533-16599)
[»] scaffold0060 (1 HSPs)
scaffold0060 (252-321)||(18923-18991)


Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 13 - 541
Target Start/End: Complemental strand, 28138710 - 28138181
Alignment:
Q  13 tgtgttctgcatcaacctatcacaacttaccatacctctctaacatcagacaaacttccggttttggaaccagtgcatgctgcaaatgtttgttcttctg 112  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138710 tgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaaccagtgcatgctgcaaatgtttgttcttctg 28138611  T
Q  113 aagctcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagccttgtctgtctggcaacaaccaagaacnnn 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  28138610 aagctcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagccttgtctgtctggcaacaaccaagaacaaa 28138511  T
Q  213 nnnnnnnnnnnnnnnnnnnntagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccta 312  Q
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138510 aaggaaaaaaagcagaaaaatagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccta 28138411  T
Q  313 aatatttgtgactgtatttgttgtttgacagtttcctttctttggtttactagcaaagctatgcttctcgccctttcttttatcagagacattttggtct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138410 aatatttgtgactgtatttgttgtttgacagtttcctttctttggtttactagcaaagctatgcttctcgccctttcttttatcagagacattttggtct 28138311  T
Q  413 ccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccgattttaatgcatttcttagcctttatcaaaaaa-gtacagtcgtt 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28138310 ccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccgattttaatgcatttcttagcctttatcaaaaaaggtacagtcgtt 28138211  T
Q  512 taattcagccaatcaaatttcaagtcatga 541  Q
    ||||||||||||||||||||||||||||||    
T  28138210 taattcagccaatcaaatttcaagtcatga 28138181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 6982835 - 6982906
Alignment:
Q  252 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 323  Q
    |||| ||||||| |||||||| |||||||||| |||||||||||| ||||||| |||| |||||||||||||    
T  6982835 agcataagtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatcttaaatatttgtga 6982906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 10502038 - 10501975
Alignment:
Q  254 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 317  Q
    ||||||||||||||||||  |||||||||| |||||||||||| | ||||| ||||| ||||||    
T  10502038 cacaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatcccaaatat 10501975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 481
Target Start/End: Original strand, 30587503 - 30587579
Alignment:
Q  401 acattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccga-ttttaatgcattt 481  Q
    |||||||||||| | ||||||||||||||||||     ||||||||||||||| |||||||||| | | |||||||||||||    
T  30587503 acattttggtctacttttttagattctctcatt-----tgtaatagggtgcaggcccactcctgactatttttaatgcattt 30587579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 539
Target Start/End: Original strand, 12466438 - 12466473
Alignment:
Q  504 cagtcgtttaattcagccaatcaaatttcaagtcat 539  Q
    ||||||||||||||| ||||||||||||||||||||    
T  12466438 cagtcgtttaattcaaccaatcaaatttcaagtcat 12466473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 18559952 - 18559840
Alignment:
Q  81 accagtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgattct 179  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||||| || |||    
T  18559952 accagtgcatactgcaactgtttgttcttctgaagttcagagaagtgtgaacattttacaaaagttttgaggggattatactaatgaggagcacgaatct 18559853  T
Q  180 agccttgtctgtc 192  Q
    ||| |||||||||    
T  18559852 agctttgtctgtc 18559840  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 21949960 - 21949895
Alignment:
Q  258 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 323  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  21949960 agtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatcccaaatatttgtga 21949895  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 21950109 - 21950067
Alignment:
Q  111 tgaagctcagagaagtgtggacattttacaaaagttttggggg 153  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21950109 tgaagctcagagaagtgtggacattttacaaaagttttggggg 21950067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 41411569 - 41411516
Alignment:
Q  274 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 327  Q
    |||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||    
T  41411569 aaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatttgtgactgt 41411516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 40275158 - 40275205
Alignment:
Q  274 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 321  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  40275158 aaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 40275205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 9446973 - 9447042
Alignment:
Q  258 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 327  Q
    |||||| |||||| | |||| ||||| |||||||||||  ||||||| ||||| |||||| |||||||||    
T  9446973 agtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgt 9447042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 14555887 - 14555960
Alignment:
Q  252 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgact 325  Q
    |||||||| ||| | || ||| |||||||||| |||||||||||  ||||||| ||||| |||||| |||||||    
T  14555887 agcacaagcagtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgact 14555960  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 541
Target Start/End: Original strand, 14096295 - 14096331
Alignment:
Q  505 agtcgtttaattcagccaatcaaatttcaagtcatga 541  Q
    |||||||||||||||||||||| |||||||| |||||    
T  14096295 agtcgtttaattcagccaatcagatttcaagacatga 14096331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 18559799 - 18559723
Alignment:
Q  233 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatc 309  Q
    ||||||||||||||| || || | |||||   |||| ||| ||||||||||||||||||| ||| ||||||| ||||    
T  18559799 tagacaagtttcaccaaaaagtataagtaacgagcagatacaaactcgttctaaaaagggcgtaatcaaaagcaatc 18559723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 38346763 - 38346691
Alignment:
Q  252 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgac 324  Q
    |||||||||||| |||| ||| | ||||||||  |||||| ||| || ||||  |||||||||||||||||||    
T  38346763 agcacaagtagtgagcagatacatactcgttcacaaaaggatgtggtaaaaaacaatcctaaatatttgtgac 38346691  T

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Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 2048758 - 2048920
Alignment:
Q  28 cctatcacaacttaccatacctctctaacatcagacaaacttccggttttg---gaaccagtgcatgctgcaaatgtttgttcttctgaagctcagagaa 124  Q
    |||||||| |||||| | ||||||||| || ||||||| ||||| ||||||   || ||||||||| |||||  |||||||||||||| |||||||||||    
T  2048758 cctatcactacttactacacctctctatcagcagacaagcttcctgttttgaaggatccagtgcatactgcagttgtttgttcttctgcagctcagagaa 2048857  T
Q  125 gtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattctagccttgt 187  Q
    |||| |||| |||||||||||||| |||||||||||| ||||  |||||||| |||||||||||    
T  2048858 gtgtagaca-tttacaaaagttttggggggattataccaatgaggagcatgagtctagccttgt 2048920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 39735815 - 39735889
Alignment:
Q  253 gcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 327  Q
    ||||||||||| |||||||| |||||||||| || ||||||||| ||||||| ||||| |||||| |||||||||    
T  39735815 gcacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatccaaaatatatgtgactgt 39735889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 2048966 - 2049051
Alignment:
Q  233 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 318  Q
    ||||||||||||| | || |||||||||||| |||| ||| |||||||||| |||||||||||  ||||||| ||||| |||||||    
T  2048966 tagacaagtttcatcaaaaagcacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatcccaaatatt 2049051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 3959014 - 3958945
Alignment:
Q  252 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 321  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  3959014 agcacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 3958945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 541
Target Start/End: Original strand, 27292985 - 27293021
Alignment:
Q  505 agtcgtttaattcagccaatcaaatttcaagtcatga 541  Q
    |||||||||||||||||||||| |||||||| |||||    
T  27292985 agtcgtttaattcagccaatcagatttcaagccatga 27293021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 33417416 - 33417503
Alignment:
Q  236 acaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 323  Q
    |||||||||||| || |||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  33417416 acaagtttcaccaaaaagcacaagtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatcctaaatatttgtga 33417503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 33417260 - 33417366
Alignment:
Q  81 accagtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgattct 179  Q
    ||||||||||| || |  ||| |||||||||| || ||||||| |||| |||||||||||| ||||||| ||||||||||||| ||  |||||||| |||    
T  33417260 accagtgcatgatggagttgtctgttcttctgcagatcagagatgtgtcgacattttacaacagttttgaggggattatactattgaggagcatgagtct 33417359  T
Q  180 agccttg 186  Q
    |||||||    
T  33417360 agccttg 33417366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 31610042 - 31610111
Alignment:
Q  258 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 327  Q
    |||||| |||||||| |||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||    
T  31610042 agtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgt 31610111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 15867420 - 15867381
Alignment:
Q  233 tagacaagtttcaccgaagagcacaagtagtaagcacata 272  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15867420 tagacaagtttcaccaaaaagcacaagtagtaagcacata 15867381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 541
Target Start/End: Original strand, 30624903 - 30624939
Alignment:
Q  505 agtcgtttaattcagccaatcaaatttcaagtcatga 541  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  30624903 agtcgtttaattcaaccaatcagatttcaagtcatga 30624939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 40715776 - 40715887
Alignment:
Q  82 ccagtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattcta 180  Q
    ||||||||| |||||  || || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||| ||||    
T  40715776 ccagtgcatactgcagttgctttttcttttgaagctcagagaagtgtggacattttacaaaagttttggggggattataccaatgaggagcatgagtcta 40715875  T
Q  181 gccttgtctgtc 192  Q
    ||||||| ||||    
T  40715876 gccttgtttgtc 40715887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 6596498 - 6596588
Alignment:
Q  233 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 323  Q
    |||||||||||||||||| |||| ||||||| |||||||  |||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  6596498 tagacaagtttcaccgaaaagcataagtagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatatttgtga 6596588  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 6596378 - 6596452
Alignment:
Q  114 agctcagagaagtgtggacattttacaaaagttttggggga-ttatactaatggagagcatgattctagccttgt 187  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||  || ||  |||||||| |||||||||||    
T  6596378 agctcagagaagtgtggatattttacaaaagttttgggggagttatcatactgaggagcatgaatctagccttgt 6596452  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 19168178 - 19168247
Alignment:
Q  252 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 321  Q
    ||||||| || | |||||||| ||||||||||||||||||||||  ||||||| ||| | ||| ||||||    
T  19168178 agcacaattattgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaattccaaaaatttgt 19168247  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 40715928 - 40716013
Alignment:
Q  233 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 318  Q
    ||||||| ||||||| || | |||||||||| |||||||| |||||||||  ||||| | ||   ||||||| |||||||||||||    
T  40715928 tagacaaatttcaccaaaaaacacaagtagtgagcacatacaaactcgtttcaaaaaagatgctatcaaaagcaatcctaaatatt 40716013  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 8308298 - 8308208
Alignment:
Q  233 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 323  Q
    |||||||||||||| ||| || ||||||||| |||||||| |||||||||||||||||  |||| ||||||||||||| ||||||||||||    
T  8308298 tagacaagtttcactgaaaagtacaagtagtgagcacatacaaactcgttctaaaaagaatgtaatcaaaagtaatcccaaatatttgtga 8308208  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 38835914 - 38836075
Alignment:
Q  28 cctatcacaacttaccatacctctctaacatcagacaaacttccggttttggaacc---agtgcatgctgcaaatgtttgttcttctgaagctcagagaa 124  Q
    |||||||| |||||||| ||||||||| || ||||||| ||||  |||||| |  |   ||||||| |||||  |||||||||||||| ||||||||  |    
T  38835914 cctatcactacttaccacacctctctatcaacagacaagcttcttgttttgaaggctctagtgcatactgcagttgtttgttcttctgcagctcaga--a 38836011  T
Q  125 gtgtggacattttacaaaagttttgggg-gattatactaatggagagcatgattctagccttgt 187  Q
    |||| ||||||||||||||||||||||| |||||||| ||||  |||||||| |||||||||||    
T  38836012 gtgtagacattttacaaaagttttggggcgattataccaatgaggagcatgagtctagccttgt 38836075  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 38836121 - 38836206
Alignment:
Q  233 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 318  Q
    ||||||||||||||| || |||||||||||| |||| ||| |||||||||| ||||| |||||  ||||||| ||||| |||||||    
T  38836121 tagacaagtttcaccaaaaagcacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatcccaaatatt 38836206  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 323
Target Start/End: Complemental strand, 49094614 - 49094543
Alignment:
Q  252 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 323  Q
    |||||||||||| |||||||| |||| ||||| ||||| |||||  ||||||| ||||| ||||||||||||    
T  49094614 agcacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatcccaaatatttgtga 49094543  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 30559431 - 30559359
Alignment:
Q  252 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgac 324  Q
    ||||||||| || |||||||| ||||| |||| |||||||||||  ||||||| ||||| ||| |||||||||    
T  30559431 agcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgtgac 30559359  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 25862676 - 25862613
Alignment:
Q  254 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 317  Q
    |||||||||| |||||||  ||||||| || |||||||||||| | ||||| ||||||||||||    
T  25862676 cacaagtagtgagcacatccaaactcgatccaaaaagggtgtaattaaaagcaatcctaaatat 25862613  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 542
Target Start/End: Original strand, 19436711 - 19436748
Alignment:
Q  505 agtcgtttaattcagccaatcaaatttcaagtcatgat 542  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  19436711 agtcgtttaattcagccaatcagatttcaagccatgat 19436748  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 541
Target Start/End: Complemental strand, 29834123 - 29834087
Alignment:
Q  505 agtcgtttaattcagccaatcaaatttcaagtcatga 541  Q
    |||||||||||||||||||||| |||||||| |||||    
T  29834123 agtcgtttaattcagccaatcagatttcaagccatga 29834087  T

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Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 386 - 500
Target Start/End: Original strand, 4292984 - 4293095
Alignment:
Q  386 tttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgcc--gattttaatgcatttct 483  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||     ||||||||||||||| ||||||||||||    ||||||||||||| |    
T  4292984 tttctttaatcaaagacattttggtctccatttttagactctctcatt-----tgtaatagggtgcaggcccactcctgccttttttttaatgcattttt 4293078  T
Q  484 tagcctttatcaaaaaa 500  Q
    |||||||||| ||||||    
T  4293079 tagcctttataaaaaaa 4293095  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 11536252 - 11536296
Alignment:
Q  252 agcacaagtagtaagcacatataaactcgttctaaaaagggtgta 296  Q
    |||||||||||| |||||||| |||||||||  ||||||||||||    
T  11536252 agcacaagtagtgagcacatacaaactcgtttaaaaaagggtgta 11536296  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 541
Target Start/End: Complemental strand, 50650570 - 50650534
Alignment:
Q  505 agtcgtttaattcagccaatcaaatttcaagtcatga 541  Q
    |||||||||||||||||||||| |||||||| |||||    
T  50650570 agtcgtttaattcagccaatcagatttcaagccatga 50650534  T

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Target: scaffold0098 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 21848 - 21800
Alignment:
Q  105 ttcttctgaagctcagagaagtgtggacattttacaaaagttttggggg 153  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  21848 ttcttctgcagctcagaaaagtgtggacattttacaaaagttttggggg 21800  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 42080758 - 42080685
Alignment:
Q  254 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 327  Q
    |||||||||| |||||||  |||||||||| |||||||||||| ||||||| ||||| |||||| | |||||||    
T  42080758 cacaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatgtttgactgt 42080685  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 17937621 - 17937709
Alignment:
Q  105 ttcttctgaagctcagagaagtgtggacattttac-aaaagttttgggg-gattatactaatggagagcatgattctagccttgtctgt 191  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||| |||| ||  || ||||| |||| ||||||||||    
T  17937621 ttcttctgcagctcagagaagtgttgacattttacaaaaagttttggggtgattacactactgaggaacatgaatctaaccttgtctgt 17937709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 17867409 - 17867361
Alignment:
Q  105 ttcttctgaagctcagagaagtgtggacattttacaaaagttttggggg 153  Q
    |||||||  |||| ||||||||||||||||||||||||| |||||||||    
T  17867409 ttcttctacagcttagagaagtgtggacattttacaaaatttttggggg 17867361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 43403941 - 43403894
Alignment:
Q  274 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 321  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  43403941 aaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 43403894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 541
Target Start/End: Original strand, 27286203 - 27286239
Alignment:
Q  505 agtcgtttaattcagccaatcaaatttcaagtcatga 541  Q
    |||||||||||||||||||||| |||||||| |||||    
T  27286203 agtcgtttaattcagccaatcagatttcaagccatga 27286239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 541
Target Start/End: Complemental strand, 52385992 - 52385956
Alignment:
Q  505 agtcgtttaattcagccaatcaaatttcaagtcatga 541  Q
    |||||||||||||||||||||| |||||||| |||||    
T  52385992 agtcgtttaattcagccaatcagatttcaagccatga 52385956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 16599 - 16533
Alignment:
Q  255 acaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 321  Q
    ||||| ||| ||||||||||||||||||| || ||||||||  ||||||| ||||| ||||||||||    
T  16599 acaaggagtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatccaaaatatttgt 16533  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 18923 - 18991
Alignment:
Q  252 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 321  Q
    ||||||| || | |||||||| ||||||||||| ||||||||||  ||||||| ||||| ||||||||||    
T  18923 agcacaattattgagcacatacaaactcgttct-aaaagggtgtcatcaaaagcaatcccaaatatttgt 18991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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