View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12122_low_4 (Length: 423)
Name: NF12122_low_4
Description: NF12122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12122_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 48255830 - 48256198
Alignment:
| Q |
18 |
ataaggaccagattcagcaggaaaagctgcataaaagccaccagtatctgaatttgaatctccaaagttgaaaatagccttgaaatcacattcaccttga |
117 |
Q |
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| T |
48255830 |
ataaggaccagattcagcaggaaaagctgcataaaagccaccagtatctgaatttgaatctccaaagttgaaaatagccttgaaatcacattcaccttga |
48255929 |
T |
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| Q |
118 |
ctcaaaccaaccaaacaaggcaacacaagcatgaaaatgaacaacaatatattcatggatgtctttgaactcatttttggaagcttaatcaaagtcactg |
217 |
Q |
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| T |
48255930 |
ctcaaaccaaccaaacaaggcaacacaagcatgaaaatgaacaacaatatattcatggatgtctttgaagtcatttttgga------------------- |
48256010 |
T |
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| Q |
218 |
cagttttatatctataatatgaaaatttcatgtttacatacattttgcaaatgtgcactccagtatttgttaatgatcaaacacatggcaaaagtgacca |
317 |
Q |
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| T |
48256011 |
-agttttatatct---atatgaaaatttcatgtttacatacattttgcaaatgtgcactccagtatttgttaatgatcaaacacatggcaaaagtgacca |
48256106 |
T |
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| Q |
318 |
ttttggacggtgtgggtaatgtaagtgtagatattgcgtactattatagataaatcactttggtttgagataaggttggatcacagttcaca |
409 |
Q |
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| T |
48256107 |
ttttggacggtgtgggtaatgtaagtgtagatattgcgtactattatagataaatcactttggtttgagataaggttggatcacagttcaca |
48256198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 10497022 - 10496970
Alignment:
| Q |
37 |
ggaaaagctgcataaaagccaccagtatctgaatttgaatctccaaagttgaa |
89 |
Q |
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| T |
10497022 |
ggaaatgctgaataaaatccacctgtatccgaatttgaatctccaaagttgaa |
10496970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 37439329 - 37439295
Alignment:
| Q |
55 |
ccaccagtatctgaatttgaatctccaaagttgaa |
89 |
Q |
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| T |
37439329 |
ccaccagtatcagaatttgaatctccaaagttgaa |
37439295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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