View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12122_low_6 (Length: 275)
Name: NF12122_low_6
Description: NF12122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12122_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 37720858 - 37720596
Alignment:
| Q |
1 |
gatgggacatcgaatggaattcaaatgtgaaattcacatgtagacgtcacattcctcacaagctcgtcctagtcgcaatgaatttgttagagnnnnnnnn |
100 |
Q |
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| T |
37720858 |
gatgggacatcgaatggaattcaaatgtgaaattcacatgtagacgtcacattcctcacaagctcgtcctagtcacaatgaatttgttagaaaaaaaaaa |
37720759 |
T |
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| Q |
101 |
nca---ttctctataaaattgaagccatcatcacataaa-ttctataaagtattattaccaaattgttctctctaattttaaagtggctcaaattttata |
196 |
Q |
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| T |
37720758 |
aaaaaattctctataaaattgaagtcatcatcacataaaattctatagagtattattaccaaattgttctctctaattttaaagtggctcaaattttata |
37720659 |
T |
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| Q |
197 |
gtgatcccaccttggtctataaggcttaaattgtattctcaatagttttagaactacaacatt |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37720658 |
gtgatcccaccttggtctataaggcttaaattgtattctcaatagttttagaactactacatt |
37720596 |
T |
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