View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12123_high_3 (Length: 236)
Name: NF12123_high_3
Description: NF12123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12123_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 1332638 - 1332801
Alignment:
| Q |
60 |
catctttgagataatctttttaaatatcataccagttgagggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagtt |
159 |
Q |
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| T |
1332638 |
catctttgagataatctttttaaatatcataccagttgagggtggtaatcctcctaaatatgctcagagaacacaattgttgacagaaaactaccaagtt |
1332737 |
T |
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| Q |
160 |
gtgtgattgatttcctctcggctttgagcttctatgacagttttgcttttacagccgtgtctct |
223 |
Q |
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| T |
1332738 |
gtgtgattgatttcccctcggctttgagcttctatgacagttttgcttttacagccgtgtctct |
1332801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1332598 - 1332646
Alignment:
| Q |
1 |
acctatcaattagttgggatac--atgtatacttctgtttcatctttga |
47 |
Q |
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| T |
1332598 |
acctatcaattagttgggatacatatgtatacttctgtatcatctttga |
1332646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 43497518 - 43497377
Alignment:
| Q |
82 |
aatatcataccagttgagggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatttcctctcggc |
181 |
Q |
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| T |
43497518 |
aatatcataccagttaagggtggtaatcctcctaaatatgctcagagaacacagttgttaacagaaaactaccaagttgtgtgattgatttcctctcggc |
43497419 |
T |
|
| Q |
182 |
tttgagcttctatgacagttttgcttttacagccgtgtctct |
223 |
Q |
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| T |
43497418 |
tttgagcttctatgacagttttgcttttacagccgtgtctct |
43497377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 28839274 - 28839383
Alignment:
| Q |
98 |
agggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatttcctctcggctttgagcttctatgac |
197 |
Q |
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||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||| |
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| T |
28839274 |
agggtggtagtcctcccaaatatgttcagagaacacaattgttaatagaaaactaccaagttgtgtgattggtttcatctcggctttgagtttctaagac |
28839373 |
T |
|
| Q |
198 |
agttttgctt |
207 |
Q |
| |
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|||||||||| |
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| T |
28839374 |
agttttgctt |
28839383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 33972271 - 33972353
Alignment:
| Q |
4 |
tatcaattagttgggatacatgtatacttctgtttcatctttgatatctcaatgaccatctttgagataatctttttaaatat |
86 |
Q |
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|||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33972271 |
tatcaattagtttggatacttgtatacttctgtaccatctttgatatctcaatgaccatctttgagataatctttttaaatat |
33972353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 36084232 - 36084091
Alignment:
| Q |
82 |
aatatcataccagttgagggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatttcctctcggc |
181 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36084232 |
aatatcataccagttgagggtggtaatcctcctaaatatgctaagagaacacaattggtaacagaaaactaccaagttgtgtgattgatttcctctcggc |
36084133 |
T |
|
| Q |
182 |
tttgagcttctatgacagttttgcttttacagccgtgtctct |
223 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||||||||| |
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| T |
36084132 |
tttgagcttctatgacagttttcctcttatagccgtgtctct |
36084091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 50603177 - 50603036
Alignment:
| Q |
85 |
atcataccagttgagggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatttcct---ctcggc |
181 |
Q |
| |
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||||||||| || |||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | || ||| |
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| T |
50603177 |
atcataccacttaagggtggtaatcctcccaaacatgctcagagaacacagttgataacagaaaactaccaagttgtgtgattgattttttaatcttggc |
50603078 |
T |
|
| Q |
182 |
tttgagcttctatgacagttttgcttttacagccgtgtctct |
223 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50603077 |
tttgagcttctatgaaagttttgcttttacagccgtgtctct |
50603036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 50609700 - 50609584
Alignment:
| Q |
98 |
agggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatt-tcctctcggctttgagcttctatga |
196 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||||| || |||| |||||||| |||||||| ||||||||| |||| || ||||| | |||||||| |
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| T |
50609700 |
agggtggtaatccgcccaaatttgctcagagaacacagctgataacggaaaactatcaagttgtctgattgattatccttccgactttgtgattctatga |
50609601 |
T |
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| Q |
197 |
cagttttgcttttacag |
213 |
Q |
| |
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|||||||||||| |||| |
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| T |
50609600 |
cagttttgctttcacag |
50609584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 11910694 - 11910655
Alignment:
| Q |
184 |
tgagcttctatgacagttttgcttttacagccgtgtctct |
223 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||||| |
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| T |
11910694 |
tgagcttctataacagttttgctcttacagccgtgtctct |
11910655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 15436348 - 15436246
Alignment:
| Q |
110 |
ctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatttcctctcggctttgagcttctatgacagttttgctttt |
209 |
Q |
| |
|
|||| ||||||| ||||||| ||| |||||||| |||||||||| |||||||||| ||| |||| ||| |||||||| ||| ||||||||||||||| | |
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| T |
15436348 |
ctcccaaatatgttcagagaccacgattgttaatagaaaactactaagttgtgtggttggtttcgtcttggctttgaaattccatgacagttttgcttat |
15436249 |
T |
|
| Q |
210 |
aca |
212 |
Q |
| |
|
||| |
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|
| T |
15436248 |
aca |
15436246 |
T |
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