View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12123_low_1 (Length: 492)
Name: NF12123_low_1
Description: NF12123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12123_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 117 - 470
Target Start/End: Original strand, 30415140 - 30415493
Alignment:
| Q |
117 |
ctcttaaatcaacgtgtgagatgttaactttacttaacatagatacaggaacagcttagacacaaacttctaattgaccattgatcatattattatacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415140 |
ctcttaaatcaacgtgtgagatgttaactttacttaacatagatacaggaacagcttagacacaaacttctaattgaccattgatcatattattatacaa |
30415239 |
T |
|
| Q |
217 |
ttaaaaaagtatactccaaaagcaatttatcaaccattttcaaagcaactaaaatataccctttaacctatgcacactgattcagagtcctcaacatcat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415240 |
ttaaaaaagtatactccaaaagcaatttatcaaccattttcaaagcaactaaaatataccctttaacctatgcacactgattcagagtcctcaacatcat |
30415339 |
T |
|
| Q |
317 |
cttcaacagcaacactggttacatcttctctagtagtcgtcatgctaatactagaagcctcgccaattgcttctggcacaccaacactaccatgtgtcag |
416 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415340 |
cttcaacagcaagactggttacatcttctctagtagtcgtcatgctaatactagaagcctcgccaattgcttctggcacaccaacactaccatgtgtcag |
30415439 |
T |
|
| Q |
417 |
gatcgtctttctcttgcttctgctaagtctccatttcctcaacaactcagaaac |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415440 |
gatcgtctttctcttgcttctgctaagtctccatttcctcaacaactcagaaac |
30415493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University