View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12123_low_2 (Length: 480)
Name: NF12123_low_2
Description: NF12123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12123_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 32847505 - 32847954
Alignment:
| Q |
18 |
tctaactccagctggatgggaaaaaagaaaatatcttcagagcactcattggataccctgtgcgtcacctagttaattagtaaataatctctactaacaa |
117 |
Q |
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| T |
32847505 |
tctaactccagctggatgggaaaaaagaaaatatcttcaaagcactcattggataccctgtgcgtcacctagttaattagtaaataatctctactaacaa |
32847604 |
T |
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| Q |
118 |
tgaaatcaaatttttgcatctctttcttaaatcttactattcattgccccgccccagatcagaaacaacaaaagcaagttgaataaagtattgtaagaat |
217 |
Q |
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| T |
32847605 |
tgaaatcaaatttttgcatatctttcttaaatcttactattcattgccccgccccagatcagaaaccacaaaagcaaattgaataaagtattgtaagaat |
32847704 |
T |
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| Q |
218 |
tcatagttgaatcagaaaccctaactaatcaacagttcattgaaaaatattgcagtgaagaatatacctgatgccacgacggtggtggttctgaatgtct |
317 |
Q |
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| T |
32847705 |
tcatagttgaatcagaaaccctaactaatcaacagttcattgaaaaatattgcagtgaagaatatacctgatgccgcgacggtggtggttctgacggtct |
32847804 |
T |
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| Q |
318 |
ccagtaagttgttcttgatctacagttctataccgtgctgattttcacaatgagtttgagtgatttctgttttcatttctaaaatatatctatctaatat |
417 |
Q |
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| T |
32847805 |
ccagtaagtttttcttgatctacagttctataccgtgctgattttcacaatgagtttgagtgatttctgttttcatttctaaaatatatctatctaatat |
32847904 |
T |
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| Q |
418 |
ttgcaggtattgtctatgtgttcattcagattttcatcatgagttatact |
467 |
Q |
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| T |
32847905 |
ttgcaggtattgtctatgtgttcattcagattttcatcatgagttatact |
32847954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 418
Target Start/End: Original strand, 32856607 - 32856695
Alignment:
| Q |
331 |
cttgatctacagttctataccgtgctgattttcacaatgagtttgagtgatttctgtttt-catttctaaaatatatctatctaatatt |
418 |
Q |
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||||||||||| || || || ||||||||||||| |||| | ||| ||||||||||||| |||||| || ||||||||||||||||| |
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| T |
32856607 |
cttgatctacacttatacactgtgctgattttcatgatgaatatgactgatttctgttttccatttcgaatgtatatctatctaatatt |
32856695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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