View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12123_low_3 (Length: 478)
Name: NF12123_low_3
Description: NF12123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12123_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 399
Target Start/End: Complemental strand, 42667959 - 42667565
Alignment:
| Q |
14 |
aatgactaaaattaaattttgggtggataagtgggatttctgagatttaaa-----gactgtgcatataaaaatgcatgttagttattattc--ttatta |
106 |
Q |
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| T |
42667959 |
aatgactagaattcaactttgtgtggataagtggggtgtccgagattcaaacctcagactgtgcatataaaaatgcatgttattgacaactgagttatta |
42667860 |
T |
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| Q |
107 |
ttctcatagggacgtgtattttttaatactagagatcttgatgttgagttaaatgtgtaccgggtactcaatttaactctatata--atctattttatta |
204 |
Q |
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| T |
42667859 |
ttttcatagggacgtgtattttttaatactaaagatcttgatgttgagttaaatgtgtaccgggtactcaatttaactctatatataatctattttatta |
42667760 |
T |
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| Q |
205 |
caccttacgaattggcttactaactactagtggtaccaacgtacaactgcacaacttgcttcaaaagaaagctatttcatgttatccatttaataaacat |
304 |
Q |
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| T |
42667759 |
caccttacgaattggcttactaactactagtggtaccaacgtacaactgcacaacttgcttcaaaagaaagctatttcatgttatccatttaataaacat |
42667660 |
T |
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| Q |
305 |
caatagtatgtgcacgttattcatatgatatgatgttagttaaatatatatttttcaaatgataaaaaagaaacatacattctaatcaagaatct |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42667659 |
caatagtatgtgcacgttattcatatgatatgatgttagttaaatatatatttttcaaatgataaaaaagaaacatacattctaatcaagaatct |
42667565 |
T |
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