View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12123_low_4 (Length: 378)
Name: NF12123_low_4
Description: NF12123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12123_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 10748135 - 10747775
Alignment:
| Q |
18 |
ggaagaagcatggaggatatgctagattctggaagaggattaccaatattgatacaagtaaccttgagttcaagttttgaagttgtgccagcacttgtaa |
117 |
Q |
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| T |
10748135 |
ggaagaagcatggaggatatgctagattctggaagaggattaccaatattgatacaagtaaccttgagttcaagttttgaagttgtgccagcacttgtaa |
10748036 |
T |
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| Q |
118 |
agcctaagttccatcaccgagtagaatgtatagtggttcttaagaagacttacaataagaaacatcattctcaagtatttaatagcacttgtaaagtaac |
217 |
Q |
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| T |
10748035 |
agcctaagttccatcaccgagtagaatgtatagtggttcttaagaagacttacaataagaaacatcattcccaagcatttaatagcacttgtaaagtaac |
10747936 |
T |
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| Q |
218 |
ttcttgattaaatgtgagtttaaagt--------------ataaaagcttgaagtcttttggtggattgttaaacggaaaggagagaaagtggtgagaaa |
303 |
Q |
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| T |
10747935 |
ttcttgattaaatgtgagtttgaagtactctatattattgataaaagcttgaagtcttttggtgggttgttaaacggaaaggagagaaagtggtgagaaa |
10747836 |
T |
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| Q |
304 |
ggattgagaaaagaaaaatagaagataatgaagtagatgtaatgtattatttggtattaga |
364 |
Q |
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| T |
10747835 |
ggattgagaaaagaaaaatagaagataatgaagtagatgtaatgtattatttggtattaga |
10747775 |
T |
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