View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12123_low_5 (Length: 237)
Name: NF12123_low_5
Description: NF12123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12123_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 1332334 - 1332122
Alignment:
| Q |
9 |
aagcagagacataatcgtttccgtaaatctgtacatctttgaagggattgagagcaattaaaattggcccaactttaatctgcatacagaaaacgcacaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1332334 |
aagcagagacataatcgtttccgtaaatctgtacatctttgaagggattgagagcaattaaaattggcccaactttactctgcatacagaaaacgcacaa |
1332235 |
T |
|
| Q |
109 |
gcagcatatgagaatacatagataatcatctgtgtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctaacccgaagatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1332234 |
gcagcatatgagaatacatagataatcatctgcgtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctaaaccgaagatt |
1332135 |
T |
|
| Q |
209 |
gtgaagaactgag |
221 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1332134 |
gtgaagaactgag |
1332122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 33970831 - 33970623
Alignment:
| Q |
9 |
aagcagagacataatcgtttccgtaaatctgtacatctttgaagggattgagagcaattaaaattggcccaactttaatctgcatacagaaaacgcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
33970831 |
aagcagagacataatcatttccgtaaatctgtacatctttgaagggattgagagcaattaaaattggcccagctttactctgcatacagaaaacgcacaa |
33970732 |
T |
|
| Q |
109 |
gcagcatatgagaatacatagataatcatctgtgtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctaacccgaagatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33970731 |
gcagcatatgagaatacatagataatcatctgagtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctacaccgaagatt |
33970632 |
T |
|
| Q |
209 |
gtgaagaac |
217 |
Q |
| |
|
||||||||| |
|
|
| T |
33970631 |
gtgaagaac |
33970623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 22791074 - 22791024
Alignment:
| Q |
167 |
acatacataaatcatatcttgagaatatctaacccgaagattgtgaagaac |
217 |
Q |
| |
|
||||||||||||||| || |||||||||||| || ||||||||||||||| |
|
|
| T |
22791074 |
acatacataaatcatctcccgagaatatctaaacctaagattgtgaagaac |
22791024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University