View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12124_high_1 (Length: 556)
Name: NF12124_high_1
Description: NF12124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12124_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 232 - 529
Target Start/End: Original strand, 26881255 - 26881565
Alignment:
| Q |
232 |
taggttataaattgtaaaactaatcaagatgcaagaa-tc--cccgtacattctacacaacgttataaattgcaaaatcaaaactatataagcattagtt |
328 |
Q |
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| T |
26881255 |
taggttataaattgtaaaactaatcaagatgcaagaactcatcccgtacattctacacaacgttataaattgcaaaatcaaaactatataagcattagtt |
26881354 |
T |
|
| Q |
329 |
ccatgggagatcaaatccacattccttgagtatccaaacaagtgtaatattagagttctttcaacaataatttactttttacattgaaatttctatgtaa |
428 |
Q |
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| T |
26881355 |
ccatgggagatcaaatccaaattccttgagtatccaaacaagtgtaatattagagttctttcaacaataatttactttttacattgaaatttctatgtaa |
26881454 |
T |
|
| Q |
429 |
tgccaaagatgcaagagacctcatacatgtttccaccaccaccaggcatggttctagaaagat----------gcattgccatggttctagaaagcttaa |
518 |
Q |
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| T |
26881455 |
tgccaaagatgcaagagacctcatacatgtttccaccaccatcgggcatggtagtataaggctcttgtcttgtgcattgccatggttctagaaagcttaa |
26881554 |
T |
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| Q |
519 |
gcaagtaactg |
529 |
Q |
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|||||||||| |
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| T |
26881555 |
acaagtaactg |
26881565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 26881084 - 26881250
Alignment:
| Q |
11 |
cagagaggaatgtggactcaccaaaatgaagttgttcccaaggccatgatgcttagagaaatggtgaaagccggtctccttttggtggaggaggttgttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26881084 |
cagagaggaatgtggactcaccaaaatgaagttgttcccaaggccatgatacttagagaaatggtgaaagccggtctccttttggtcgaggaggttgttt |
26881183 |
T |
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| Q |
111 |
taataggagtttatgttccaatcgaggaagcaaccaggcgggaattagggaacaagagaagaacaca |
177 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
26881184 |
taataggagtttatgttctaatcgaggaagcaacgaggcgggaattacggaacaagagaagaacaca |
26881250 |
T |
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