View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12124_high_4 (Length: 445)
Name: NF12124_high_4
Description: NF12124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12124_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 34033179 - 34032760
Alignment:
| Q |
18 |
tatacttcactttgagattgcaacaactataatttatcatgctaaggataatgttgtctagattgcaaactaaaaacaagcaactagatagaaatcgaaa |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033179 |
tatacttcactttgagattgcagcaactataatttatcatgctaaggataatgttgtctagattgcaaactaaaaacaagcaactagatagaaatcgaaa |
34033080 |
T |
|
| Q |
118 |
cgacataatcaaatgactaactaaagagacattatatttatacagcaagtcacttgtaacaatcttgaagagagtggtagacttaccttacctcacagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033079 |
cgacataatcaaatgactaactaaagagacattatatttatacagcaagtcacttgtaacaatcttgaagagagtggtagacttaccttacctcacagaa |
34032980 |
T |
|
| Q |
218 |
gttccaaactggggagagaatctacaatagagaagttgagatgattgtgaatgatataattgtttgtttcaaagaagacattatttgggaagataactta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34032979 |
gttccaaactggggagagaatctacaatagagaagttgagatgattgtgaatgatataattgtttgttgcaaagaagacattatttgggaagataactta |
34032880 |
T |
|
| Q |
318 |
ttagaaaagacatgaagtaaggaatggtttgaggaaaagaccaagaaagtatgtagcaattttctgatattttttctaatgtttgatttggaaaggtttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34032879 |
ttagaaaagacatgaagtaaggaatggtttgaggaaaagaccaagaaagtatgtagcaattttctgatattttttctaatgtttgatttggaaaggtttt |
34032780 |
T |
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| Q |
418 |
acacggtttgacacaggttc |
437 |
Q |
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||||||||||||| |||||| |
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| T |
34032779 |
acacggtttgacaaaggttc |
34032760 |
T |
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