View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12124_low_2 (Length: 511)

Name: NF12124_low_2
Description: NF12124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12124_low_2
NF12124_low_2
[»] chr3 (72 HSPs)
chr3 (17-290)||(28148903-28149176)
chr3 (20-327)||(28184774-28185080)
chr3 (20-331)||(28082712-28083022)
chr3 (20-287)||(28509767-28510033)
chr3 (29-287)||(28480584-28480841)
chr3 (345-492)||(28149205-28149352)
chr3 (126-256)||(28134715-28134845)
chr3 (20-235)||(28160222-28160436)
chr3 (349-470)||(27919794-27919915)
chr3 (25-328)||(28054394-28054690)
chr3 (25-328)||(28064819-28065115)
chr3 (345-470)||(8539625-8539750)
chr3 (345-474)||(17744983-17745112)
chr3 (345-474)||(19046303-19046432)
chr3 (349-481)||(28036886-28037018)
chr3 (355-482)||(28083061-28083188)
chr3 (345-482)||(28185241-28185378)
chr3 (153-297)||(27979596-27979740)
chr3 (345-447)||(28161399-28161501)
chr3 (345-482)||(28135423-28135560)
chr3 (355-447)||(27979930-27980022)
chr3 (349-473)||(28003642-28003766)
chr3 (227-327)||(28161138-28161238)
chr3 (153-297)||(28151056-28151200)
chr3 (153-292)||(11420153-11420292)
chr3 (167-297)||(28003328-28003458)
chr3 (372-481)||(18079134-18079243)
chr3 (345-481)||(18077048-18077184)
chr3 (364-447)||(28005300-28005383)
chr3 (199-297)||(27919514-27919612)
chr3 (349-481)||(27459363-27459496)
chr3 (357-424)||(27390661-27390728)
chr3 (373-475)||(26127958-26128060)
chr3 (373-475)||(26178008-26178110)
chr3 (345-475)||(26629103-26629233)
chr3 (349-411)||(28054969-28055031)
chr3 (349-411)||(28065394-28065456)
chr3 (206-297)||(28036610-28036701)
chr3 (365-475)||(11420527-11420637)
chr3 (207-297)||(17745307-17745397)
chr3 (207-297)||(19046627-19046717)
chr3 (345-447)||(27379376-27379478)
chr3 (363-481)||(28084514-28084632)
chr3 (220-280)||(28507044-28507104)
chr3 (194-284)||(26114053-26114143)
chr3 (365-446)||(26630806-26630887)
chr3 (373-472)||(26139907-26140006)
chr3 (377-475)||(26110964-26111062)
chr3 (377-475)||(26233310-26233408)
chr3 (404-480)||(28055905-28055981)
chr3 (404-480)||(28066330-28066406)
chr3 (355-443)||(12147176-12147267)
chr3 (345-467)||(28506894-28507017)
chr3 (363-409)||(27350056-27350102)
chr3 (355-443)||(27348381-27348472)
chr3 (355-443)||(27377721-27377812)
chr3 (363-422)||(27389193-27389252)
chr3 (197-324)||(27459684-27459810)
chr3 (424-475)||(28151344-28151395)
chr3 (373-475)||(26113453-26113558)
chr3 (377-475)||(26205247-26205345)
chr3 (373-446)||(26235777-26235851)
chr3 (125-194)||(26178724-26178793)
chr3 (282-331)||(28135212-28135261)
chr3 (404-447)||(18025075-18025118)
chr3 (125-184)||(26128685-26128744)
chr3 (214-284)||(26128809-26128879)
chr3 (345-391)||(28151284-28151330)
chr3 (435-472)||(27249808-27249845)
chr3 (256-320)||(18025327-18025391)
chr3 (412-472)||(26129265-26129325)
chr3 (412-472)||(26179321-26179381)
[»] chr7 (2 HSPs)
chr7 (115-297)||(8692895-8693077)
chr7 (345-443)||(8692618-8692716)
[»] scaffold0257 (2 HSPs)
scaffold0257 (107-290)||(18416-18596)
scaffold0257 (343-447)||(18624-18728)
[»] scaffold0043 (2 HSPs)
scaffold0043 (363-447)||(51950-52034)
scaffold0043 (364-443)||(53670-53752)
[»] scaffold1142 (1 HSPs)
scaffold1142 (345-447)||(1503-1605)
[»] chr2 (2 HSPs)
chr2 (363-447)||(22394372-22394456)
chr2 (355-443)||(22392650-22392741)
[»] scaffold1163 (1 HSPs)
scaffold1163 (382-447)||(1-66)
[»] chr4 (2 HSPs)
chr4 (408-447)||(9328789-9328828)
chr4 (408-447)||(9382566-9382605)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 72)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 28148903 - 28149176
Alignment:
Q  17 cacagacggagaatgaacttattgaaaatgttcctgatttagaattaccaacaaacttaaaagtgatttctatgccatgtttgaattgagttagatattt 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  28148903 cacagacggagaatgaacttattgaaaatgctcctgatttagaaataccaacaaacttaaaagtgatttctagtccatgtttgaattgagttagatattt 28149002  T
Q  117 aattgatgcaattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaa 216  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28149003 aattgatgcaattaatagctgaagatcattaatgcctatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaa 28149102  T
Q  217 actgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaa 290  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28149103 actgatactgccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaa 28149176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 28184774 - 28185080
Alignment:
Q  20 agacggagaatgaacttattgaaaatgttcctgatttagaattaccaacaaacttaaaagtgatttctatgccatgtttgaattgagttagatatttaat 119  Q
    |||| ||| |||||||| | ||||||||||||||||||||| |||||||||| | |||||||||||| | |||||||   || || ||||||  ||||||    
T  28184774 agacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtca-aactgcgttagaattttaat 28184872  T
Q  120 tgatgcaattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaact 219  Q
     |||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| || ||||||  |||||||||| ||    
T  28184873 ggatgtaattaatagctgaagatcattattgcttctgttcttgttacaggagttgatgaatgaacaatcaatggagcagcaacgtctacttggagaacct 28184972  T
Q  220 gatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaatactaaatgaaatatattttat 319  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||  || ||||||||||||||    
T  28184973 gatactaccgtcaaaccttctcaggtaaatcatgtaatgtcgtaccaccgcgttgtgcatataaagctaaaaatgaaataccgaaagaaatatattttat 28185072  T
Q  320 ttcaagtg 327  Q
    ||||||||    
T  28185073 ttcaagtg 28185080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 28082712 - 28083022
Alignment:
Q  20 agacggagaatgaacttattgaaaatgttcctgatttagaattaccaacaaacttaaaagtgatttctatgccatgtttgaattgagttagatatttaat 119  Q
    |||| ||| |||||||| | ||||||||||||||||||||| |||||||||| | |||||||||||| | |||||||  ||||||  |||||  ||||||    
T  28082712 agacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtc-gaattgccttagaattttaat 28082810  T
Q  120 tgatgcaattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaact 219  Q
     ||||  || ||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||||  | |||||||||||    
T  28082811 ggatgttatgaatcgctgaagatcgttaatgcttctgttcttgtaacaggagttgatgaatgaacaaacaatggaccaacaacgtctagttggagaaact 28082910  T
Q  220 gatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaatactaaatgaaatatattttat 319  Q
    |||||| |||||||||||| |||||||||||||| |||||| |||||   |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  28082911 gatactgccgtcaaaccttttcaggtaaatcatgcaatatcataccaatacattgtgcatataaagctaaaaatgaaatactgaaagaaatatattttat 28083010  T
Q  320 ttcaagtgcttc 331  Q
    ||||| ||||||    
T  28083011 ttcaactgcttc 28083022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 28510033 - 28509767
Alignment:
Q  20 agacggagaatgaacttattgaaaatgttcctgatttagaattaccaacaaacttaaaagtgatttctatgccatgtttgaattgagttagatatttaat 119  Q
    |||| ||| |||||||| | ||||||||||||||||||||| |||||||||| | |||||||||||| | |||||||   ||||| ||||||  || |||    
T  28510033 agacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtca-aattgtgttagaatttgaat 28509935  T
Q  120 tgatgcaattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaact 219  Q
     |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||  |||||||||| |     
T  28509934 ggatgtaattaatagctgaagataattaatgcttatgtgcttgttacaggagttgatgaatgaacaatcgatggagcaacaacgtctacttggagaagcc 28509835  T
Q  220 gatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagct 287  Q
    ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28509834 gattctgccgtcaaaccttctcaggtaaatcaagtaatatcgtaccaccgcattgtgcatataaagct 28509767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 28480841 - 28480584
Alignment:
Q  29 atgaacttattgaaaatgttcctgatttagaattaccaacaaacttaaaagtgatttctatgccatgtttgaattgagttagatatttaattgatgcaat 128  Q
    |||||||| | ||||||||| ||||||||||| |||||||||| | |||||||||||| | |||||||   ||||| ||||||  || ||| |||| |||    
T  28480841 atgaacttgtggaaaatgttactgatttagaaataccaacaaattcaaaagtgatttccaggccatgtca-aattgtgttagaatttgaatggatgtaat 28480743  T
Q  129 taatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatacttcc 228  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||| ||||| |||||||||  |||||||||| | |||||| ||    
T  28480742 taatagctgaagataattaatgcttatgtgcttgttacaggagttgatgaatcaacaatctatggagcaacaacgtctacttggagaagccgatactccc 28480643  T
Q  229 gtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagct 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28480642 gtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcataaaaagct 28480584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 345 - 492
Target Start/End: Original strand, 28149205 - 28149352
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28149205 attcttttgaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgctgaagaagg 28149304  T
Q  445 aaccacgacagctaatgccaagacaataacaacatcattaggtccatt 492  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28149305 aaccacgtcagctaatgccaagacaataacaacatcattaggtccatt 28149352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 28134715 - 28134845
Alignment:
Q  126 aattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatact 225  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28134715 aattaatagcttaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacaatcaatggaccaacaacgttcacttggagaaactgatact 28134814  T
Q  226 tccgtcaaaccttctcaggtaaatcatgtaa 256  Q
    ||||||||||||||||||||||||| |||||    
T  28134815 tccgtcaaaccttctcaggtaaatcgtgtaa 28134845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 28160222 - 28160436
Alignment:
Q  20 agacggagaatgaacttattgaaaatgttcctgatttagaattaccaacaaacttaaaagtgatttctatgccatgtttgaattgagttagatatttaat 119  Q
    |||| ||| |||||||| | ||||||||||| ||||||||| |||||||||| | |||||||||||| | |||||||   || || ||||||  ||||||    
T  28160222 agacagagcatgaacttgtggaaaatgttcccgatttagaaataccaacaaattcaaaagtgatttccaggccatgtca-aactgcgttagaattttaat 28160320  T
Q  120 tgatgcaattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaact 219  Q
     |||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||| || ||||||  |||||||||| ||    
T  28160321 ggatgtaattaatagctgaagatcattattgcttctgttcttgttacaggagttgatgaatgaacaatcgatggaacagcaacgtctacttggagaacct 28160420  T
Q  220 gatacttccgtcaaac 235  Q
    |||||| || ||||||    
T  28160421 gatactaccatcaaac 28160436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 349 - 470
Target Start/End: Original strand, 27919794 - 27919915
Alignment:
Q  349 tttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaacc 448  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |    
T  27919794 tttttaacactttttcaatgtaggaattgaattatactacaatcttcaacatccatttaattttaagcagggtatcaaaatatgtgttgaagaaggaatc 27919893  T
Q  449 acgacagctaatgccaagacaa 470  Q
    ||  ||||||||||||||||||    
T  27919894 acatcagctaatgccaagacaa 27919915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 25 - 328
Target Start/End: Original strand, 28054394 - 28054690
Alignment:
Q  25 gagaatgaacttattgaaaatgttcctgatttagaattaccaacaaacttaaaagtgatttctatgccatgtttgaattgagttagatatttaattgatg 124  Q
    ||||||||||||||||||||||||||  ||||| || |||||||||||| | |||| ||||  | ||||||    ||||   |||| |||||||| ||||    
T  28054394 gagaatgaacttattgaaaatgttccatatttaaaaataccaacaaactcagaagtaatttgcaggccatggaa-aattccattagttatttaatggatg 28054492  T
Q  125 caattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatac 224  Q
     |||||||||| ||||||| |||| |||| ||||||| ||||||      ||  |||||| ||  ||| | ||||  | |  | ||||||||| ||||||    
T  28054493 taattaatagcggaagatcgttaaagcttttgttcttattacag------atccatgaactattgatgaagcaacttcatcaatttggagaaattgatac 28054586  T
Q  225 ttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaatactaaatgaaatatattttatttcaa 324  Q
    | ||||||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  28054587 tgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaaaatgaaatacttaaagaaatatattttatttcaa 28054686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 25 - 328
Target Start/End: Original strand, 28064819 - 28065115
Alignment:
Q  25 gagaatgaacttattgaaaatgttcctgatttagaattaccaacaaacttaaaagtgatttctatgccatgtttgaattgagttagatatttaattgatg 124  Q
    ||||||||||||||||||||||||||  ||||| || |||||||||||| | |||| ||||  | ||||||    ||||   |||| |||||||| ||||    
T  28064819 gagaatgaacttattgaaaatgttccatatttaaaaataccaacaaactcagaagtaatttgcaggccatggaa-aattccattagttatttaatggatg 28064917  T
Q  125 caattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatac 224  Q
     |||||||||| ||||||| |||| |||| ||||||| ||||||      ||  |||||| ||  ||| | ||||  | |  | ||||||||| ||||||    
T  28064918 taattaatagcggaagatcgttaaagcttttgttcttattacag------atccatgaactattgatgaagcaacttcatcaatttggagaaattgatac 28065011  T
Q  225 ttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaatactaaatgaaatatattttatttcaa 324  Q
    | ||||||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  28065012 tgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaaaatgaaatacttaaagaaatatattttatttcaa 28065111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 345 - 470
Target Start/End: Complemental strand, 8539750 - 8539625
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| | ||||||||||||||||||||    
T  8539750 attctttttaacacttttccaatgcaggaattgaattatactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaagg 8539651  T
Q  445 aaccacgacagctaatgccaagacaa 470  Q
    ||| ||  ||||||||||||| ||||    
T  8539650 aactacatcagctaatgccaatacaa 8539625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 345 - 474
Target Start/End: Complemental strand, 17745112 - 17744983
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    ||||||||| || ||||||||||  ||||||||||||| ||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||    
T  17745112 attctttttcactctttgtcaataaaggaattgaattaaactacaatcttaaacatctgtttaattataagcagggtaacgaaataagtgttgaagaagg 17745013  T
Q  445 aaccacgacagctaatgccaagacaataac 474  Q
    ||||||  ||||||||||||||| ||||||    
T  17745012 aaccacatcagctaatgccaagagaataac 17744983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 345 - 474
Target Start/End: Complemental strand, 19046432 - 19046303
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    ||||||||| || ||||||||||  ||||||||||||| ||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||    
T  19046432 attctttttcactctttgtcaataaaggaattgaattaaactacaatcttaaacatctgtttaattataagcagggtaacgaaataagtgttgaagaagg 19046333  T
Q  445 aaccacgacagctaatgccaagacaataac 474  Q
    ||||||  ||||||||||||||| ||||||    
T  19046332 aaccacatcagctaatgccaagagaataac 19046303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 349 - 481
Target Start/End: Original strand, 28036886 - 28037018
Alignment:
Q  349 tttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaacc 448  Q
    ||||| |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||     
T  28036886 tttttgacaccttttcaatgtaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttttagaaggaaca 28036985  T
Q  449 acgacagctaatgccaagacaataacaacatca 481  Q
    ||  |||||| || ||| ||||||||| |||||    
T  28036986 acatcagctactgacaatacaataacatcatca 28037018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 355 - 482
Target Start/End: Original strand, 28083061 - 28083188
Alignment:
Q  355 acactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgaca 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||| ||  ||||||||||||||||||||||| ||  ||    
T  28083061 acactttgtcaatgcaggaattgaattatactacaatcttaaacatctttctaattttaagcaggttagtgaaataagtgttgaagaaggaactacatca 28083160  T
Q  455 gctaatgccaagacaataacaacatcat 482  Q
    ||||||||||||| || |||| ||||||    
T  28083161 gctaatgccaagagaacaacagcatcat 28083188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 345 - 482
Target Start/End: Original strand, 28185241 - 28185378
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||  |||||||||||||||| || ||||||||||||| |||||||    
T  28185241 attctttttgacactttgtctatgcaggaattgacttatactacaatcttaaacatctttttaattttaagcaggttagcgaaataagtgttcaagaagg 28185340  T
Q  445 aaccacgacagctaatgccaagacaataacaacatcat 482  Q
    ||| ||  || |||||||||||| || ||| |||||||    
T  28185341 aactacttcatctaatgccaagagaagaacgacatcat 28185378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 27979596 - 27979740
Alignment:
Q  153 tatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatacttccgtcaaaccttctcaggtaaatcat 252  Q
    ||||||||| ||||||||||||||| |||||| |  |||||| ||||||||| ||||||||||||||||| || |||||||||||||||  | |||| ||    
T  27979596 tatgttcttattacaggagttgatggatgaacaacaaatggagcaacaacgtccacttggagaaactgatgctaccgtcaaaccttctccagaaaataat 27979695  T
Q  253 gtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaa 297  Q
    ||||||| |||||||| ||||||| ||||||||||||||| ||||    
T  27979696 gtaatatagtaccacctcattgtgaatataaagctaaaaaagaaa 27979740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 345 - 447
Target Start/End: Original strand, 28161399 - 28161501
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||  |||||||||||||||| || |||||||||||||||||||||    
T  28161399 attctttttgacactttgtctatgcaggaattgacttatactacaatcttaaacatctttttaattttaagcaggttagcgaaataagtgttgaagaagg 28161498  T
Q  445 aac 447  Q
    |||    
T  28161499 aac 28161501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 345 - 482
Target Start/End: Original strand, 28135423 - 28135560
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||||||| |||  || ||||||||||||| ||  ||||||||||||||||||||    
T  28135423 attcattttgacactttgtcaatgcaggagttgaattatactacaatcttaaaaatcttttaaattttaagcaggttagtgaaataagtgttgaagaagg 28135522  T
Q  445 aaccacgacagctaatgccaagacaataacaacatcat 482  Q
    ||| ||  ||||||||||||||| || |||| ||||||    
T  28135523 aactacatcagctaatgccaagagaacaacagcatcat 28135560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 355 - 447
Target Start/End: Original strand, 27979930 - 27980022
Alignment:
Q  355 acactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaac 447  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  27979930 acactttttcaatgcaggaattgagttatactacaatctcaaacatccttttaattttaagcagggtatcgagataagtgttgaagaaggaac 27980022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 349 - 473
Target Start/End: Original strand, 28003642 - 28003766
Alignment:
Q  349 tttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaacc 448  Q
    ||||| ||||||| |||||| |||||||||||||||| |  | |||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |    
T  28003642 tttttgacactttttcaatgtaggaattgaattataccatcaacttaaacatccatttaattttaagcagggtattgaaaaaagtgttgaagatggaatc 28003741  T
Q  449 acgacagctaatgccaagacaataa 473  Q
    ||  |||||||||||||||||||||    
T  28003742 acatcagctaatgccaagacaataa 28003766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 28161138 - 28161238
Alignment:
Q  227 ccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaatactaaatgaaatatattttatttcaagt 326  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||  || |||| ||||||||||||||||    
T  28161138 ccgtcaaaccttctcaggtaaatcatgtaatgtcgtaacaccgcgttgtgcatataaagctaaaaatgaaataccgaaagaaacatattttatttcaagt 28161237  T
Q  327 g 327  Q
    |    
T  28161238 g 28161238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 28151056 - 28151200
Alignment:
Q  153 tatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatacttccgtcaaaccttctcaggtaaatcat 252  Q
    |||||||||  ||||||||||||||||||||| |  |||||| ||| |||||  || |||||||| |||| || |||||||||||||||| | |||| ||    
T  28151056 tatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataat 28151155  T
Q  253 gtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaa 297  Q
    ||||||| |||||||| ||||||||||||||| ||||||| ||||    
T  28151156 gtaatatagtaccacctcattgtgcatataaatctaaaaaagaaa 28151200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 11420153 - 11420292
Alignment:
Q  153 tatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatacttccgtcaaaccttctcaggtaaatcat 252  Q
    ||||||| | |||||||||||||||||||||| | ||||||| ||||||||| ||||||| ||||||||| || ||||||||||||  |||| ||||       
T  11420153 tatgttcatattacaggagttgatgaatgaacaaccaatggagcaacaacgtccacttggtgaaactgatgctaccgtcaaacctttgcaggaaaataca 11420252  T
Q  253 gtaatatcgtaccaccgcattgtgcatataaagctaaaaa 292  Q
    ||||||| |||||| | ||||||||||||||| |||||||    
T  11420253 gtaatatagtaccatctcattgtgcatataaaactaaaaa 11420292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 167 - 297
Target Start/End: Original strand, 28003328 - 28003458
Alignment:
Q  167 aggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtacca 266  Q
    |||||||||||||||||| |  |||||| ||| |||||  |||||||||||||||| || |||||||||||||||| | |||| ||||||||| ||||||    
T  28003328 aggagttgatgaatgaacaagaaatggagcaaaaacgtctacttggagaaactgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtacca 28003427  T
Q  267 ccgcattgtgcatataaagctaaaaatgaaa 297  Q
    || ||| ||||||||||| ||||||| ||||    
T  28003428 cctcatcgtgcatataaatctaaaaaagaaa 28003458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 372 - 481
Target Start/End: Complemental strand, 18079243 - 18079134
Alignment:
Q  372 gaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaat 471  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||| || |||||||||||||||| |||||||  |  | |||||||||||||||||    
T  18079243 gaattgaattatactacagtcttaaacatccttctaattttaagcaggttaacgaaataagtgttgaaaaaggaacttcatcggctaatgccaagacaat 18079144  T
Q  472 aacaacatca 481  Q
    |||| |||||    
T  18079143 aacatcatca 18079134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 345 - 481
Target Start/End: Complemental strand, 18077184 - 18077048
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    ||||||||| || |||| |||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||||||  | |||||||||||||||| | ||    
T  18077184 attctttttgactctttttcaaagcaagaattgaattatactacaatcttaaacatcctttttattttaagcaggtcaacgaaataagtgttgaaaaggg 18077085  T
Q  445 aaccacgacagctaatgccaagacaataacaacatca 481  Q
    | |  |  | ||||||||||||||||||||| |||||    
T  18077084 accgtcatcggctaatgccaagacaataacatcatca 18077048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 364 - 447
Target Start/End: Original strand, 28005300 - 28005383
Alignment:
Q  364 caatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaac 447  Q
    ||||| |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| | ||||||||||||||||||    
T  28005300 caatgtaggaattgaattatactacaatctcaaacatccttctaattttaagcagggtatcgagaaaagtgttgaagaaggaac 28005383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 27919514 - 27919612
Alignment:
Q  199 caacgttcacttggagaaactgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaa 297  Q
    |||||| |||||||||||| ||||||| |||||||||||||||| | |||| ||||||||| |||||||| ||||||| ||||||||||||||| ||||    
T  27919514 caacgtccacttggagaaattgatactaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgaatataaagctaaaaaagaaa 27919612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 349 - 481
Target Start/End: Complemental strand, 27459496 - 27459363
Alignment:
Q  349 tttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccattta-attttaagcagggtatcgaaataagtgttgaagaaggaac 447  Q
    ||||| || |||| |||||| | ||||||| || |||||||||||||||| |||||||  ||||||||||||| |||||| || | ||||||||||||||    
T  27459496 ttttttactctttttcaatgaaagaattgacttgtactacaatcttaaacttccatttttattttaagcagggcatcgaattacgagttgaagaaggaac 27459397  T
Q  448 cacgacagctaatgccaagacaataacaacatca 481  Q
    |||  ||||||||||||||| ||||||| |||||    
T  27459396 cacatcagctaatgccaagataataacaccatca 27459363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 27390728 - 27390661
Alignment:
Q  357 actttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatc 424  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  27390728 actttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagggtatc 27390661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 475
Target Start/End: Complemental strand, 26128060 - 26127958
Alignment:
Q  373 aattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaata 472  Q
    ||||||||||| |||||||||||||||||  ||||  ||||||||||||||| |||||| |||||||||||||||  |  ||| ||||||||||||||||    
T  26128060 aattgaattatcctacaatcttaaacatcattttacatttaagcagggtatccaaataaatgttgaagaaggaactgcatcagataatgccaagacaata 26127961  T
Q  473 aca 475  Q
    |||    
T  26127960 aca 26127958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 475
Target Start/End: Complemental strand, 26178110 - 26178008
Alignment:
Q  373 aattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaata 472  Q
    ||||||||||| |||||||||||||||||  ||||  ||||||||||||||| |||||| |||||||||||||||  |  ||| ||||||||||||||||    
T  26178110 aattgaattatcctacaatcttaaacatcattttacatttaagcagggtatccaaataaatgttgaagaaggaactgcatcagataatgccaagacaata 26178011  T
Q  473 aca 475  Q
    |||    
T  26178010 aca 26178008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 475
Target Start/End: Original strand, 26629103 - 26629233
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    |||| |||| ||||||| ||||||||| | ||||| ||||| || | || ||| |||| ||||| ||||||||||||||||| ||||| |||||||||||    
T  26629103 attcgttttgacactttttcaatgcagaacttgaactatacaaccaactcaaatatccttttaaatttaagcagggtatcgagataagcgttgaagaagg 26629202  T
Q  445 aaccacgacagctaatgccaagacaataaca 475  Q
    || |||  |||||||||||||| ||||||||    
T  26629203 aaacacatcagctaatgccaagccaataaca 26629233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 28054969 - 28055031
Alignment:
Q  349 tttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  28054969 tttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatctttttaattt 28055031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 28065394 - 28065456
Alignment:
Q  349 tttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  28065394 tttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatctttttaattt 28065456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 28036610 - 28036701
Alignment:
Q  206 cacttggagaaactgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaa 297  Q
    ||||||||||||||||| || |||||||| ||||||  | |||| | ||||||| |||||||| ||||||||||||||||||||||||||||    
T  28036610 cacttggagaaactgatgctaccgtcaaagcttctccagaaaataacgtaatatagtaccacctcattgtgcatataaagctaaaaatgaaa 28036701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 475
Target Start/End: Original strand, 11420527 - 11420637
Alignment:
Q  365 aatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgcca 464  Q
    ||||||| |||| |||||||| |  | ||||||||| ||||||||||||||||||||||  |||||||||| |||||||||||| |  | ||||||||||    
T  11420527 aatgcagaaatttaattataccatcaacttaaacatgcatttaattttaagcagggtattaaaataagtgtcgaagaaggaacctcatcggctaatgcca 11420626  T
Q  465 agacaataaca 475  Q
    | |||||||||    
T  11420627 aaacaataaca 11420637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 17745397 - 17745307
Alignment:
Q  207 acttggagaaactgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaa 297  Q
    |||||||||||||||| || |||||||||||||||||| |||| ||||||||| |||||||| ||||||  ||||||  ||||||||||||    
T  17745397 acttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcattgtttatataagactaaaaatgaaa 17745307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 19046717 - 19046627
Alignment:
Q  207 acttggagaaactgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaa 297  Q
    |||||||||||||||| || |||||||||||||||||| |||| ||||||||| |||||||| ||||||  ||||||  ||||||||||||    
T  19046717 acttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcattgtttatataagactaaaaatgaaa 19046627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 447
Target Start/End: Original strand, 27379376 - 27379478
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    ||||| ||| |||| || ||||||||| |||||||||||||||||||||||||||||| |||||| || |||||||||  || ||||||  |||||||||    
T  27379376 attctgtttgacacattttcaatgcagtaattgaattatactacaatcttaaacatccttttaatatttagcagggtaatgagataagttctgaagaagg 27379475  T
Q  445 aac 447  Q
    |||    
T  27379476 aac 27379478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 481
Target Start/End: Original strand, 28084514 - 28084632
Alignment:
Q  363 tcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgc 462  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||| || ||||||||||  | |||||| ||||||||||||| ||  || || |||     
T  28084514 tcaatgcaggaattgaatcatactacaatcttaagcatccttttaatatttagcagggtatgaagataagttttgaagaaggaactacatcaacttatga 28084613  T
Q  463 caagacaataacaacatca 481  Q
    ||| ||||||||| |||||    
T  28084614 caaaacaataacatcatca 28084632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 28507104 - 28507044
Alignment:
Q  220 gatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcata 280  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  28507104 gatactgccgtcaaaccttctccggtaaatcatgtaatatcgtaccaccacattgtgcata 28507044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 284
Target Start/End: Complemental strand, 26114143 - 26114053
Alignment:
Q  194 accaacaacgttcacttggagaaactgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaa 284  Q
    ||||||||| | |||||||||||||||||||| || ||||||||||||| | | || ||||||||| |||||| | |||||||||||||||    
T  26114143 accaacaacatccacttggagaaactgatactaccatcaaaccttctcaagaagataatgtaatatagtaccatctcattgtgcatataaa 26114053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 26630806 - 26630887
Alignment:
Q  365 aatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaa 446  Q
    |||||||||||||||||||| ||||| | |||  |||| | |||||||||||||| |||||| |||||||||||||||||||    
T  26630806 aatgcaggaattgaattatattacaaacctaagtatccttataattttaagcaggttatcgagataagtgttgaagaaggaa 26630887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 472
Target Start/End: Complemental strand, 26140006 - 26139907
Alignment:
Q  373 aattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaata 472  Q
    |||| ||||||||||||||||||||||||  ||||  | ||||||||||||| | |||| ||||||||||||||  ||  ||| ||||||||||||||||    
T  26140006 aatttaattatactacaatcttaaacatcgttttacatataagcagggtatccagataaatgttgaagaaggaaatacatcagttaatgccaagacaata 26139907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 475
Target Start/End: Complemental strand, 26111062 - 26110964
Alignment:
Q  377 gaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaataaca 475  Q
    ||||||||||||||||| || ||||  ||||  ||||||||||||||||| ||||  |||||||||||||  ||  ||||||||||||||| |||||||    
T  26111062 gaattatactacaatctaaagcatcgttttacatttaagcagggtatcgagataaacgttgaagaaggaaatacatcagctaatgccaagaaaataaca 26110964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 475
Target Start/End: Complemental strand, 26233408 - 26233310
Alignment:
Q  377 gaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaataaca 475  Q
    ||||||||||||||||| || ||||  ||||  ||||||||||||||||| ||||  |||||||||||||  ||  ||||||||||||||| |||||||    
T  26233408 gaattatactacaatctaaagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacatcagctaatgccaagaaaataaca 26233310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 404 - 480
Target Start/End: Original strand, 28055905 - 28055981
Alignment:
Q  404 tttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaataacaacatc 480  Q
    |||||||||||||||| || ||||||||||||| |||||||||| || ||| |||||||||||| || ||| |||||    
T  28055905 tttaattttaagcaggttagcgaaataagtgttcaagaaggaactacaacatctaatgccaagagaagaacgacatc 28055981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 404 - 480
Target Start/End: Original strand, 28066330 - 28066406
Alignment:
Q  404 tttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaataacaacatc 480  Q
    |||||||||||||||| || ||||||||||||| |||||||||| || ||| |||||||||||| || ||| |||||    
T  28066330 tttaattttaagcaggttagcgaaataagtgttcaagaaggaactacaacatctaatgccaagagaagaacgacatc 28066406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 12147176 - 12147267
Alignment:
Q  355 acactttgtcaatgcaggaattgaattata----ctacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaag 443  Q
    |||||||  |||||||||||||| ||||||    |||||| || |||||||| ||||||||||||||||||||||| |||| |||||||||||    
T  12147176 acacttttccaatgcaggaattgtattatatatactacaaactgaaacatcc-tttaattttaagcagggtatcgagataactgttgaagaag 12147267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 467
Target Start/End: Complemental strand, 28507017 - 28506894
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatact-acaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaag 443  Q
    ||||||||| ||||||||||||  ||||| |||||||||||| | | | |||||||||| | |||||||||||||| ||  ||||||||||| ||| |||    
T  28507017 attctttttgacactttgtcaagccaggagttgaattatactaatatttttaaacatccttgtaattttaagcaggttagtgaaataagtgtcgaaaaag 28506918  T
Q  444 gaaccacgacagctaatgccaaga 467  Q
    |  | ||  |||||||||||||||    
T  28506917 gtgctacatcagctaatgccaaga 28506894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 27350056 - 27350102
Alignment:
Q  363 tcaatgcaggaattgaattatactacaatcttaaacatccatttaat 409  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  27350056 tcaatgcagtaattgaattatactacaatcttaaacatccttttaat 27350102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 27348381 - 27348472
Alignment:
Q  355 acactttgtcaatgcaggaattgaattata----ctacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaag 443  Q
    |||||||  |||||||| ||||||||||||    |||||| || |||||||| |||||||||||||||||| |||| |||| |||||||||||    
T  27348381 acacttttccaatgcagtaattgaattatatttactacaaactgaaacatcc-tttaattttaagcagggtgtcgagataactgttgaagaag 27348472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 27377721 - 27377812
Alignment:
Q  355 acactttgtcaatgcaggaattgaattata----ctacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaag 443  Q
    |||||||  |||||||||||||||||||||    |||||  || |||||||| |||||||||||||||||||| || |||| |||||||||||    
T  27377721 acacttttccaatgcaggaattgaattatatatactacagactgaaacatcc-tttaattttaagcagggtattgagataactgttgaagaag 27377812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 27389252 - 27389193
Alignment:
Q  363 tcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggta 422  Q
    |||||||||||||| |||||||||||||||| |||||||| |||||| || | |||||||    
T  27389252 tcaatgcaggaattcaattatactacaatctgaaacatccttttaatatttaacagggta 27389193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 324
Target Start/End: Complemental strand, 27459810 - 27459684
Alignment:
Q  197 aacaacgttcacttggagaaactgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaa 296  Q
    ||||| || |||||| |||||||||| ||  ||||||||||||||||| |||| |||||||||  |||||||  |||||| || ||||| |||| | |||    
T  27459810 aacaatgtccacttgcagaaactgatgctagcgtcaaaccttctcaggaaaataatgtaatataataccaccttattgtgtat-taaagataaataagaa 27459712  T
Q  297 atactaaatgaaatatattttatttcaa 324  Q
    | | |||| |||||| |||||| |||||    
T  27459711 acattaaaagaaataaattttacttcaa 27459684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 475
Target Start/End: Original strand, 28151344 - 28151395
Alignment:
Q  424 cgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaataaca 475  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||| ||||    
T  28151344 cgaaataagtgttgaagaaggaactacatcagctaatgccaagacaaaaaca 28151395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 475
Target Start/End: Complemental strand, 26113558 - 26113453
Alignment:
Q  373 aattgaattatacta--caatcttaaacatccattta-attttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagaca 469  Q
    |||||||||||||||  |||||||||||||| ||||| |||| |||||||||||| | |||| || |||||||||||  |   |||| |||||||||| |    
T  26113558 aattgaattatactatacaatcttaaacatcaatttacatttaaagcagggtatccatataaatgctgaagaaggaaatatatcagccaatgccaagaaa 26113459  T
Q  470 ataaca 475  Q
    ||||||    
T  26113458 ataaca 26113453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 475
Target Start/End: Complemental strand, 26205345 - 26205247
Alignment:
Q  377 gaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaataaca 475  Q
    ||||||||||||||||| || ||||  ||||  ||||||||||||||||| ||||  |||||||||||||  ||   |||||||||||| | |||||||    
T  26205345 gaattatactacaatctaaagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataaca 26205247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 26235851 - 26235777
Alignment:
Q  373 aattgaattatactacaatctt-aaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaa 446  Q
    |||||||||||||||||||||| |||||||  ||||  ||||||||||||||| | |||  ||||||||||||||    
T  26235851 aattgaattatactacaatctttaaacatcattttacatttaagcagggtatccagatatatgttgaagaaggaa 26235777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 26178793 - 26178724
Alignment:
Q  125 caattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatgga 194  Q
    |||||||| ||| ||||||| |||||| | | ||||||||||||||||| |||||||||| || ||||||    
T  26178793 caattaatcgctcaagatcactaatgcatctattcttgttacaggagttaatgaatgaacaattaatgga 26178724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 28135212 - 28135261
Alignment:
Q  282 aaagctaaaaatgaaatactaaatgaaatatattttatttcaagtgcttc 331  Q
    |||||||||| |||||||||||| |||| | |||||||||||||||||||    
T  28135212 aaagctaaaagtgaaatactaaaagaaaaagattttatttcaagtgcttc 28135261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 18025118 - 18025075
Alignment:
Q  404 tttaattttaagcagggtatcgaaataagtgttgaagaaggaac 447  Q
    ||||||||||||||||||||||| |||| || ||||||||||||    
T  18025118 tttaattttaagcagggtatcgagataactgctgaagaaggaac 18025075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 26128744 - 26128685
Alignment:
Q  125 caattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaac 184  Q
    |||||||| ||| ||||||| |||||| | | ||||||||||||||||| ||||||||||    
T  26128744 caattaatcgctcaagatcactaatgcatctattcttgttacaggagttaatgaatgaac 26128685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 26128879 - 26128809
Alignment:
Q  214 gaaactgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaa 284  Q
    |||||||||||| || ||||||||||||||| | || ||||||||| |||||| | ||| ||||| |||||    
T  26128879 gaaactgatactaccatcaaaccttctcaggaagataatgtaatatagtaccatctcatcgtgcaaataaa 26128809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #68
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 28151284 - 28151330
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaat 391  Q
    ||||||||| ||||||||||| | ||| |||||||||||||||||||    
T  28151284 attctttttcacactttgtcagtacagaaattgaattatactacaat 28151330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #69
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 27249808 - 27249845
Alignment:
Q  435 ttgaagaaggaaccacgacagctaatgccaagacaata 472  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  27249808 ttgaagaaggaaccacatcagctaatgccaagacaata 27249845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #70
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 18025391 - 18025327
Alignment:
Q  256 atatcgtaccaccgcattgtgcatataaagctaaaaatgaaatactaaatgaaatatattttatt 320  Q
    |||| ||||||||| ||  ||||||||||||||||||||||||| | ||  |||| |||||||||    
T  18025391 atatagtaccaccgaatcttgcatataaagctaaaaatgaaatatttaagaaaatttattttatt 18025327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #71
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 26129325 - 26129265
Alignment:
Q  412 taagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaata 472  Q
    ||||||||||||| | |||| |||||||||||||||  |  |||||||||| |||||||||    
T  26129325 taagcagggtatccagataaatgttgaagaaggaactgcatcagctaatgctaagacaata 26129265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #72
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 26179381 - 26179321
Alignment:
Q  412 taagcagggtatcgaaataagtgttgaagaaggaaccacgacagctaatgccaagacaata 472  Q
    ||||||||||||| | |||| |||||||||||||||  |  ||| ||||||||||||||||    
T  26179381 taagcagggtatccagataaatgttgaagaaggaactgcatcagttaatgccaagacaata 26179321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 115 - 297
Target Start/End: Complemental strand, 8693077 - 8692895
Alignment:
Q  115 ttaattgatgcaattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggag 214  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||| |||||||| |||||||||    
T  8693077 ttaattgatgtaattaataggtgaagatcattaatgcttctgttcttgttacaggaattgatgaatgaacaatcgatggacaaacaacgtccacttggag 8692978  T
Q  215 aaactgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaaaatgaaa 297  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  8692977 aaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaa 8692895  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 443
Target Start/End: Complemental strand, 8692716 - 8692618
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaag 443  Q
    ||||||||| ||| |||||||||| | ||||||||||||||| ||||||||||||||  ||||||||||| |||| || ||||| ||||||||||||||    
T  8692716 attctttttgacattttgtcaatgaaagaattgaattatactgcaatcttaaacatctttttaattttaatcaggttagcgaaacaagtgttgaagaag 8692618  T

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Target: scaffold0257 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 107 - 290
Target Start/End: Original strand, 18416 - 18596
Alignment:
Q  107 ttagatatttaattgatgcaattaatagctgaagatcattaatgcttatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttc 206  Q
    ||||||||||||| |||| ||||||||  |   ||||||||||||||||||||||||||||||||||||||||||||  ||| ||| | ||||||||| |    
T  18416 ttagatatttaatggatgtaattaatattt---gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtcc 18512  T
Q  207 acttggagaaactgatacttccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaa 290  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  18513 acttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa 18596  T

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Target: scaffold0257; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 343 - 447
Target Start/End: Original strand, 18624 - 18728
Alignment:
Q  343 gcattctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaa 442  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||| ||  ||||||||||||||| ||    
T  18624 gcattctttttgacactttgtcaatgcaggaattgaattatactacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaa 18723  T
Q  443 ggaac 447  Q
    |||||    
T  18724 ggaac 18728  T

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Target: scaffold0043 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 363 - 447
Target Start/End: Complemental strand, 52034 - 51950
Alignment:
Q  363 tcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaac 447  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||| || ||||||||| ||| |||||| |||||||||||||    
T  52034 tcaatgcagtaattgaattatactacaatcttaaacatccttttaatatttagcagggtagcgagataagttttgaagaaggaac 51950  T

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Target: scaffold0043; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 53752 - 53670
Alignment:
Q  364 caatgcaggaattgaattata----ctacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaag 443  Q
    |||||||||||||||||||||    |||||| || |||||||| |||||||||||||||||| |||| |||| |||||||||||    
T  53752 caatgcaggaattgaattatatatactacaaactgaaacatcc-tttaattttaagcagggtgtcgagataactgttgaagaag 53670  T

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Target: scaffold1142 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 447
Target Start/End: Original strand, 1503 - 1605
Alignment:
Q  345 attctttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaagg 444  Q
    ||||||||| || | || ||||||||||||||||| |||||||||||||||||||| | |||| | || ||||||||| ||| || ||||||||||||||    
T  1503 attctttttgacgccttttcaatgcaggaattgaaatatactacaatcttaaacattcttttattgtttagcagggtaacgagatgagtgttgaagaagg 1602  T
Q  445 aac 447  Q
    |||    
T  1603 aac 1605  T

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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 447
Target Start/End: Original strand, 22394372 - 22394456
Alignment:
Q  363 tcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaac 447  Q
    ||||||||| |||||||||||||||||||||||||||| | |||||| || |||||||||  || |||||| |||||||||||||    
T  22394372 tcaatgcagtaattgaattatactacaatcttaaacatgcttttaatgtttagcagggtaatgagataagttttgaagaaggaac 22394456  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 22392650 - 22392741
Alignment:
Q  355 acactttgtcaatgcaggaattgaattata----ctacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaag 443  Q
    |||||||  |||||||||||||| ||||||    |||||| || |||||||| ||||| |||||||||||| |||| |||| |||||||||||    
T  22392650 acacttttccaatgcaggaattgtattatatatactacaaactgaaacatcc-tttaagtttaagcagggtgtcgagataactgttgaagaag 22392741  T

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Target: scaffold1163 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 447
Target Start/End: Original strand, 1 - 66
Alignment:
Q  382 atactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttgaagaaggaac 447  Q
    ||||||||||||||||||||| |||||| || ||||||||| ||| |||||| |||||||||||||    
T  1 atactacaatcttaaacatccttttaatatttagcagggtagcgagataagttttgaagaaggaac 66  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 9328828 - 9328789
Alignment:
Q  408 attttaagcagggtatcgaaataagtgttgaagaaggaac 447  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  9328828 attttaagcaggttagcgaaataagtgttgaagaaggaac 9328789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 9382605 - 9382566
Alignment:
Q  408 attttaagcagggtatcgaaataagtgttgaagaaggaac 447  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  9382605 attttaagcaggttagcgaaataagtgttgaagaaggaac 9382566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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