View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12124_low_3 (Length: 497)
Name: NF12124_low_3
Description: NF12124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12124_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 22 - 483
Target Start/End: Complemental strand, 37697812 - 37697351
Alignment:
| Q |
22 |
agaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37697812 |
agaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgactgctgcaacgacaaatggaagggt |
37697713 |
T |
|
| Q |
122 |
gtctcatgcgactcagaccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccctttcc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37697712 |
gtctcatgcgactcagaccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctcccttttc |
37697613 |
T |
|
| Q |
222 |
ttgacgacttctctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaactcaccaatcttgagtacctcaccctcagccatac |
321 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37697612 |
ttgacgatttctctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaactcaccaatcttgattacctcaccctcagccatac |
37697513 |
T |
|
| Q |
322 |
cataccagcatctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697512 |
cataccagcatctccggcgagataccaaacactctttcaaatatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctg |
37697413 |
T |
|
| Q |
422 |
cttcactctcctctctccctaagcttgaaataatctctttagacggcaaccaactcacaggt |
483 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697412 |
cttcactctcctcgctccctaagcttgaaataatctctttagacggcaaccaactcacaggt |
37697351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 30 - 483
Target Start/End: Original strand, 38013277 - 38013735
Alignment:
| Q |
30 |
tactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggtgtctcatg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| || || ||||||||| |||||||||| ||||||||||| |
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|
| T |
38013277 |
tactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaaca-ca--gactgctgcaacaacaaatggaaaggtgtctcatg |
38013373 |
T |
|
| Q |
130 |
cgactcagac------------cgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccct |
217 |
Q |
| |
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| |||||||| ||||| | ||||||| |||||| |||| |||| ||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
38013374 |
caactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccct |
38013473 |
T |
|
| Q |
218 |
ttccttgacgacttctctctctcccgcatccccaacctcgtcggcactatcc---caccgtccatctccaaactcaccaatcttgagtacctcaccctca |
314 |
Q |
| |
|
|||||| | |||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||||||| || ||| ||||||||||||||| |
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| T |
38013474 |
ttccttaccttactctctctctcccacatccccaaccttgtcggcactatcctcccaccgtccatcttcaaactca--aaacttaagtacctcaccctca |
38013571 |
T |
|
| Q |
315 |
gccataccataccagcatctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtccc |
414 |
Q |
| |
|
| |||| |||| |||||||||||||||||||||||| || ||| |||| ||||| || ||||| ||||||||| |||||||||||| ||||||||| |
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| T |
38013572 |
g--atac---accaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaactaactggtccc |
38013666 |
T |
|
| Q |
415 |
ctccctgcttcactctcctctctccctaagcttgaaataatctctttagacggcaaccaactcacaggt |
483 |
Q |
| |
|
||||| || ||||||||||||||||||| ||| | |||| |||| |||||||||||||||| |||| |
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|
| T |
38013667 |
ctccccactacactctcctctctccctaaccttacagaaatcactttggacggcaaccaactcaaaggt |
38013735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 325 - 431
Target Start/End: Original strand, 37994043 - 37994149
Alignment:
| Q |
325 |
accagcatctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgctt |
424 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||| |||| ||||||||| || |||||| ||| | ||||||||||||||||||||||||| || | |
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|
| T |
37994043 |
accaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaaccatcgacatcagcgacaacaaactcactggtcccctccccgcat |
37994142 |
T |
|
| Q |
425 |
cactctc |
431 |
Q |
| |
|
||||||| |
|
|
| T |
37994143 |
cactctc |
37994149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 37993755 - 37993802
Alignment:
| Q |
35 |
caaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggat |
82 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37993755 |
caaatcaaaaaacaatttggcaacccaaccaaactctcttcatgggat |
37993802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 37989560 - 37989616
Alignment:
| Q |
30 |
tactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
86 |
Q |
| |
|
|||||||||| || ||||||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
37989560 |
tactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaa |
37989616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 375
Target Start/End: Original strand, 25326164 - 25326518
Alignment:
| Q |
22 |
agaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggt |
121 |
Q |
| |
|
||||||| |||| |||| ||||||||| | |||| |||||||||||| ||||||||| | |||| |||| ||| ||||||| | |||||||| | ||| |
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|
| T |
25326164 |
agaagccctactgaaaattaaaaaagaactaggcagcccaaccaaactttcttcatggaacccaa-caac--tgactgctgcagccacaaatgggaaggt |
25326260 |
T |
|
| Q |
122 |
gtctcatgcgactcaga------ccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccat---cactaacc |
212 |
Q |
| |
|
||| |||||||||| | ||| ||| ||| |||| |||| ||||||||||||||| |||| |||| | ||||||||||||| |||||||| |
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|
| T |
25326261 |
gtcctatgcgactcacaaacctaccgtgtcaacaagcttgatctcttcgacctcaacctccccaaacacgttcaaattccaccctccatattcactaacc |
25326360 |
T |
|
| Q |
213 |
tccctttccttgacgacttctctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaactcaccaatcttgagtacctcaccct |
312 |
Q |
| |
|
|||||||| | || ||||| || | ||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| ||||| | | |
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|
| T |
25326361 |
tccctttcataaactttctctctatcgacaacatccccaacctcgttggcactatcccgccttccatctccaaactcaccaaacttgaggtcctcatcat |
25326460 |
T |
|
| Q |
313 |
cagccataccataccagcatctccggcgagataccaaacactctttcaaagatgaaaacccta |
375 |
Q |
| |
|
||| | || |||||||||||||||||||||||| | || ||| |||| ||||||||| |
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|
| T |
25326461 |
cag-----cggcacaagcatctccggcgagataccaaactcactctcacagattaaaacccta |
25326518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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