View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12125_high_1 (Length: 1198)
Name: NF12125_high_1
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_high_1 |
 | |
|
| [»] scaffold0178 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 942; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 942; E-Value: 0
Query Start/End: Original strand, 11 - 1179
Target Start/End: Complemental strand, 23440794 - 23439599
Alignment:
| Q |
11 |
gaacctgtgaacgacgacggtaaatacgacgaactggaaatacagagggaacgccgaagtaagaagggtgcaacgctgatgtggagaaaaactttaaaca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23440794 |
gaacctgtgaacgacgacggtaaatacgatgaactggaaatacagagggaacgccgaagtaagaagggtgcaacgctgatgtggagaaaaactttaaaca |
23440695 |
T |
|
| Q |
111 |
atttagacatttgttggtatatatgttttagtaaaatt-gatgagttattaaaggtgtaactatatgtgtatgttttagttcttgggaagaaaaatattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23440694 |
atttagacatttgttggtatatatgttttagtaaaatttgatgagttattaaaggtgtaactatatgtgtatattttagttcttgggaagaaaaatattc |
23440595 |
T |
|
| Q |
210 |
tatgttttagcatatgttctatattt------------cctagaactttatattcaaccgttaaatttattaaattaagttctataggcagttactgaag |
297 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
23440594 |
tatgttttagcatatgttctatatgtttgatatatttacctagaactttatattcaacggttaaatttattaaattatgttctataggtagttactgaag |
23440495 |
T |
|
| Q |
298 |
tgtaactataataagttggacacttgttgtcaacacatcttttgaaaaaacacatccagattcataagtactcatttaaaaacct--aagtaatttatta |
395 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
23440494 |
tgtatctataataagttggacacttgttgtcaacacatcttttgaaaaaacacatccagattcataa---ctcatttaaaaacctctaagtaatttatta |
23440398 |
T |
|
| Q |
396 |
ttgtttgaccaaaacctctaaatagtttagagaatta-----------gaaatttattaagcagatgaggttttggaatt-aattcctctaaaagataac |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
23440397 |
ttgtttgaccaaaacctctaaatagtttagagaattatagtataattagaaatttattaagcagatgaggttttggaatttaattcctctaaaaaataac |
23440298 |
T |
|
| Q |
484 |
tcttatagtagtagttatacatcaatttagttacaaaattatgaaatttattgtacagaaaagttatgtgatttgattagtttgggcacaacataaatta |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23440297 |
tcttatagtagtagttatacatcaatttagttacaaaattatgaaatttattgtacagaaaagttatgtgatttgattagtttgggcacaacataaatta |
23440198 |
T |
|
| Q |
584 |
cgtcacgagtgattcgggatattcatcaacaaagttatttatttgtaaattgcaagaaaactcaaaagaattagggcctaaatctgatatgacgaatcaa |
683 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23440197 |
cgtcacgagtgattcgggattttcatcaacaaagttatttatttgtaaattgcaagaaaactcaaaagaattagggcctaaatctgatatgacgaatcaa |
23440098 |
T |
|
| Q |
684 |
cttgattaaagcaacattcagtccagtgatgagcatctaatgaaagcttcaaaatcttgaacaacttggtcaacagcatggattatcatcttttttacct |
783 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23440097 |
cttgattaaagcaactttcagtccagtgatgagcatctaatgaaagcttcaaaatcttgaacaacttggtcaacaacatggattatcatcttttttacct |
23439998 |
T |
|
| Q |
784 |
gtttcaagaaaaaatatcacaattaatctccataaataaacacaaaaataaagcaaagttgtctactattatatgataagagatgttacacctttagatt |
883 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
23439997 |
gtttcaagaaaaaatatcacaattaatccccataattaaacacaaaaataaagcaaagttgtctacaattatatgataagagatgttacaccttcagatt |
23439898 |
T |
|
| Q |
884 |
tcgaacttggtgagggcatccagcaggtataaatactgcttcaccaagcttctgctcaaaagtccaaggta------ctgtaattgattaagattcttgt |
977 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
23439897 |
tcgaacttggtgagggcatccagcaggtataaatactgcttcaccaagcttctgctcaaaagtccaaggaactacacctgtaattgattaagattcttgt |
23439798 |
T |
|
| Q |
978 |
aaataactagtcacatgatgatttaattaatatagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaa |
1077 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
23439797 |
aaataactagtcacatgatgatttaattaatatagaaagtttgaaatgctatgtgctaaccaaactcttccttcag---cttcttatgctcaaaagtcaa |
23439701 |
T |
|
| Q |
1078 |
ataaaaacattgatcatgaataggatggacaacctaagcaaaaaagaagttagtgagactcaaagatgtnnnnnnnnntataagcggaaacgttgatgaa |
1177 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
23439700 |
ataaaaacattggtcatgaataggatggacaacctaagcaaaaaagaagttagtgagactcaaacatgtaaaaataaatataagcggaaacgttgatgaa |
23439601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 247; Significance: 1e-136; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 851 - 1146
Target Start/End: Original strand, 8672961 - 8673262
Alignment:
| Q |
851 |
attatatgataagagatgttacacctttagatttcgaacttggtgagggcatccagcaggtataaatactgcttcaccaagcttctgctcaaaagtccaa |
950 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8672961 |
attatatgataagagatgtttcaccttcagatttcgaacttggtgagggcatccagcaggtataaatagtgcttcaccaagcttctgctcaaaagtccaa |
8673060 |
T |
|
| Q |
951 |
ggtact------gtaattgattaagattcttgtaaataactagtcacatgatgatttaattaatatagaaagtttgaaatgctatgtgctaaccaaactc |
1044 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8673061 |
ggtactacacctgtaattgattaagattcttgtaaataactagtcacatgatgatttaattaatctagaaagtttgaaatgctatgtgctaaccaaactc |
8673160 |
T |
|
| Q |
1045 |
ttcctccagcttcttcttatgctcaaaagtcaaataaaaacattgatcatgaataggatggacaacctaagcaaaaaagaagttagtgagactcaaagat |
1144 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
8673161 |
ttcatccagcttcttcttatgctcaaaagtcaaataaaaacattggtcatgaataggatggacaacctaagcaacaaagaagttagtgagactcaaacat |
8673260 |
T |
|
| Q |
1145 |
gt |
1146 |
Q |
| |
|
|| |
|
|
| T |
8673261 |
gt |
8673262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 851 - 1146
Target Start/End: Original strand, 8719258 - 8719555
Alignment:
| Q |
851 |
attatatgataagagatgttacacctttagatttcgaacttggtgagggcatccagcaggtataaatactgcttcaccaagcttctgctcaaaagtccaa |
950 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
8719258 |
attatatgataagagatgtttcaccttcagatttctgacttggtgagggcatccagcaggtataaatactgcttcaccaagtttctgctcaaaagtcaaa |
8719357 |
T |
|
| Q |
951 |
ggtact------gtaattgattaagattcttgtaaataactagtcacatgatgatttaattaatatagaaagtttgaaatgctatgtgctaaccaaactc |
1044 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8719358 |
ggtactacacctgtaattgattaagattcttgtaaataatgaatcacatgatga----attaatctagaaagtttgaaatgctatgtgctaaccaaactc |
8719453 |
T |
|
| Q |
1045 |
ttcctccagcttcttcttatgctcaaaagtcaaataaaaacattgatcatgaataggatggacaacctaagcaaaaaagaagttagtgagactcaaagat |
1144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| || |||||||||||||||||||||| || |
|
|
| T |
8719454 |
ttcctccagcttcttcttatgctcaaaagtcaaataaaaacattggtcatgaataggatgaataacctaagaaacaaagaagttagtgagactcaaacat |
8719553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 851 - 1141
Target Start/End: Original strand, 8591421 - 8591714
Alignment:
| Q |
851 |
attatatgataagagatgttacacctttagatttcgaacttggtgagggcatccagcaggtataaatactgcttcaccaagcttctgctcaaaagtccaa |
950 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
8591421 |
attatatgataagagatgtttcaccttcagatttctgacttggtgagggcatccagcaagtataaatactgcttcaccaagtttctgctcaaaagtcaaa |
8591520 |
T |
|
| Q |
951 |
ggtact------gtaattgattaa-gattcttgtaaataactagtcacatgatgatttaattaatatagaaagtttgaaatgctatgtgctaaccaaact |
1043 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||| | |
|
|
| T |
8591521 |
ggtactacacctgtaattgattaaagattcatgtaaataactaattgtatgatgc----attaagctagaaagtttgaaatgctacgtgctaaccaaatt |
8591616 |
T |
|
| Q |
1044 |
cttcctccagcttcttcttatgctcaaaagtcaaataaaaacattgatcatgaataggatggacaacctaagcaaaaaagaagttagtgagactcaaa |
1141 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||||| |
|
|
| T |
8591617 |
ctttctccagcttcttcttatggtcaaaagtcaaataaaaacattggtcatgaataggatgaataacctaagcaacaaagaagttagtgagactcaaa |
8591714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 677 - 789
Target Start/End: Original strand, 8718810 - 8718922
Alignment:
| Q |
677 |
gaatcaacttgattaaagcaacattcagtccagtgatgagcatctaatgaaagcttcaaaatcttgaacaacttggtcaacagcatggattatcatcttt |
776 |
Q |
| |
|
|||||| ||||||| ||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8718810 |
gaatcagcttgattgaagcaacattcagcctagtgatgagcatctaatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatcttt |
8718909 |
T |
|
| Q |
777 |
tttacctgtttca |
789 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8718910 |
tttacctgtttca |
8718922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 677 - 809
Target Start/End: Original strand, 8672500 - 8672632
Alignment:
| Q |
677 |
gaatcaacttgattaaagcaacattcagtccagtgatgagcatctaatgaaagcttcaaaatcttgaacaacttggtcaacagcatggattatcatc-tt |
775 |
Q |
| |
|
|||||| ||||||| |||||||||| |||| | |||||||||| ||||||||||||| ||||||||||||||| | |||||| |||||||||||||| || |
|
|
| T |
8672500 |
gaatcagcttgattgaagcaacatttagtctaatgatgagcatttaatgaaagcttccaaatcttgaacaactagatcaacaacatggattatcatcttt |
8672599 |
T |
|
| Q |
776 |
ttttacctgtttcaagaaaaaatatcacaattaa |
809 |
Q |
| |
|
||||| |||||||| | ||||||||| ||||||| |
|
|
| T |
8672600 |
ttttatctgtttcatg-aaaaatatcgcaattaa |
8672632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 717 - 840
Target Start/End: Original strand, 8590983 - 8591106
Alignment:
| Q |
717 |
catctaatgaaagcttcaaaatcttgaacaacttggtcaacagcatggattatcatcttttttacctgtttcaagaaaaaatatcacaattaatctccat |
816 |
Q |
| |
|
|||| |||||||||||| || |||| ||||||||||||| |||||| ||||||||| ||||||| ||||| || ||||| |||||||||||| | | || |
|
|
| T |
8590983 |
catccaatgaaagcttccaattcttcaacaacttggtcagcagcatagattatcatattttttaactgttccataaaaaagtatcacaattaaacccgat |
8591082 |
T |
|
| Q |
817 |
aaataaacacaaaaataaagcaaa |
840 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
8591083 |
aaataaacacaaaaacaaagcaaa |
8591106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 481 - 609
Target Start/End: Original strand, 8589749 - 8589875
Alignment:
| Q |
481 |
aactcttatagtagtagttatacatcaatttagttacaaaattatgaaatttattgtacagaaaagttatgtgatttgattagtttgggcacaacataaa |
580 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||| |||||||||| ||| ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
8589749 |
aactcttctagtagtagttatacattaatttagttagaaaa--ctgaaatttatactacgaaaaagttatgtgatttgatctgtttggatacaacataaa |
8589846 |
T |
|
| Q |
581 |
ttacgtcacgagtgattcgggatattcat |
609 |
Q |
| |
|
||| | || | | ||||||||||||||| |
|
|
| T |
8589847 |
ttatgataccaatcattcgggatattcat |
8589875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 10486005 - 10485971
Alignment:
| Q |
106 |
aaacaatttagacatttgttggtatatatgtttta |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10486005 |
aaacaatttagacatttgttggtatatatgtttta |
10485971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 10460165 - 10460131
Alignment:
| Q |
106 |
aaacaatttagacatttgttggtatatatgtttta |
140 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
10460165 |
aaacaatttaaacatttgttggtatatatgtttta |
10460131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 8589463 - 8589504
Alignment:
| Q |
295 |
aagtgtaactataataagttggacacttgttgtcaacacatc |
336 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
8589463 |
aagtgtaagtatagtaagtttgacacttgttgtcaacacatc |
8589504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 814 - 855
Target Start/End: Original strand, 8718921 - 8718962
Alignment:
| Q |
814 |
cataaataaacacaaaaataaagcaaagttgtctactattat |
855 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
8718921 |
cataaataaacacaaatattaagcaaagttgtctacaattat |
8718962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 17665172 - 17665260
Alignment:
| Q |
11 |
gaacctgtgaacgacgacggtaaatacgacgaactggaaatacagagggaacgccgaagtaagaagggtgcaacgctgatgtggagaaaa |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
17665172 |
gaacctgtgaacgacaacggtaa-tacgacgaactggaaatacagatggaatgccgaaggaagaagggtgcaacagtgatgcggagaaaa |
17665260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1033 - 1125
Target Start/End: Original strand, 55410251 - 55410343
Alignment:
| Q |
1033 |
ctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattgatcatgaataggatggacaacctaagcaaaaaagaa |
1125 |
Q |
| |
|
|||||||||||| |||| || ||| ||||| ||||| |||||||||||||||||||| |||||||| ||||| ||||||||| ||| |||||| |
|
|
| T |
55410251 |
ctaaccaaactcctccttcaacttattcttgtgctccaaagtcaaataaaaacattggtcatgaattggatgtacaacctaaccaacaaagaa |
55410343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 888 - 949
Target Start/End: Original strand, 55410105 - 55410166
Alignment:
| Q |
888 |
acttggtgagggcatccagcaggtataaatactgcttcaccaagcttctgctcaaaagtcca |
949 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||| || ||||| || |||||||||||||| |
|
|
| T |
55410105 |
acttgatgtgggcatccagcaggaataaatactgcctccccaagtttttgctcaaaagtcca |
55410166 |
T |
|
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Target: scaffold0178 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 19888 - 19974
Alignment:
| Q |
11 |
gaacctgtgaacgacgacggtaaatacgacgaactggaaatacagagggaacgccgaagtaagaagggtgcaacgctgatgtggaga |
97 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||||||||||| || |||||||||| || || |||||||||| | ||||||||||| |
|
|
| T |
19888 |
gaacctgtgaacaacgacgctaaagacgacgaactggaaagactgagggaacgctaaaagaaaaagggtgcaaaggtgatgtggaga |
19974 |
T |
|
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