View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12125_high_11 (Length: 485)
Name: NF12125_high_11
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_high_11 |
 | |
|
| [»] scaffold0317 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 46 - 466
Target Start/End: Original strand, 54425164 - 54425574
Alignment:
| Q |
46 |
gaccaatttgatattttatagttatatatgaaactctacaaaaac--ccgtgcatcgcacgtgttggattggagtctaaaaatgatctatctattactag |
143 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | |
|
|
| T |
54425164 |
gaccaatttgatattttatact---atatgaaactctacaaaaaaaaccgtgcatcgcacgtgttgga-----gtctaaaaat----tatctattacaat |
54425251 |
T |
|
| Q |
144 |
ggacgcagttccgtctaaatccaaacaatagaaggaacaaaaatggaagaagaaagcgaagccgagtggggcgagttgactcgtgagtgcctcatcaata |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54425252 |
ggacgcagttccgtctaaatccaaacaatagaaggaacaaaaatggaagtagaaagcgaagccgagtggggcgagttgactcgtgagtgcctcatcaaca |
54425351 |
T |
|
| Q |
244 |
tcctatctcgactcagctttgacgatcaatggcgtggtgcgatgcttgtttgcaaatcatggttcaacgccttcaaggaagaaccatctcttcactctgt |
343 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54425352 |
tcctatctcgactcagctttgaagatcaatggcgcggttcgttgcttgtttgcaaatcatggttcaacgccttcaaggaagaaccatctcttcactctgt |
54425451 |
T |
|
| Q |
344 |
attcaacctcgatccttacttcgacaagccactcgaatcacctcgctggtggaccctccaattcgaatctcaaattgattccatgcttcgttctatcgtt |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54425452 |
attcaacctcgatccttacttcgacaagccactcgaatcacctcgctggtggaccctccaattcgaatctcaaattgattccatgcttcgttctatcgtt |
54425551 |
T |
|
| Q |
444 |
caatggactcatatcttcctcac |
466 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
54425552 |
caatggactcatatcttcctcac |
54425574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 54430430 - 54430275
Alignment:
| Q |
210 |
tggggcgagttgactcgtgagtgcctcatcaatatcctatctcgactcagctttgacgatcaatggcgtggtgcgatgcttgtttgcaaatcatggttca |
309 |
Q |
| |
|
||||||||||| |||| || ||||||||||| ||| | |||||||| | |||| ||||||||||| ||||| |||||||| || ||||||||||||| |
|
|
| T |
54430430 |
tggggcgagttatctcgagattgcctcatcaacatcttcattcgactcaccgttgaagatcaatggcgcggtgcaatgcttgtatgtaaatcatggttca |
54430331 |
T |
|
| Q |
310 |
acgccttcaaggaagaaccatctcttcactctgtattcaacctcgatccttacttc |
365 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
54430330 |
gtgcctttaaggaagaaccttctcttcactctttattcaatctcgacccttacttc |
54430275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 376 - 465
Target Start/End: Complemental strand, 54430240 - 54430151
Alignment:
| Q |
376 |
tcgaatcacctcgctggtggaccctccaattcgaatctcaaattgattccatgcttcgttctatcgttcaatggactcatatcttcctca |
465 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || || | || ||||||||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
54430240 |
tcgaatcacctcgctagtggaccctccaatttgagtccaagatcgattccatgcttcaatctatcgttcagtggactcatatctttctca |
54430151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 37381841 - 37381911
Alignment:
| Q |
28 |
ctctacgattaataatatgaccaatttgatattttatagttatatatgaaactctacaaaaacccgtgcatcgcacg |
104 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
37381841 |
ctctacgattaataatatagtcaatttgatattttat------atatgaaactctacaaaaacacgtgcatcgcacg |
37381911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 19833 - 19789
Alignment:
| Q |
63 |
atagttatatatgaaactctacaaaaacccgtgcatcgcacgtgtt |
108 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
19833 |
atagttatatatgaaactctac-aaaacctgtgcatcgcacgtgtt |
19789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 30694392 - 30694356
Alignment:
| Q |
67 |
ttatatatgaaactctacaaaaacccgtgcatcgcacg |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30694392 |
ttatatatgaaactctac-aaaacccgtgcatcgcacg |
30694356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 15107465 - 15107429
Alignment:
| Q |
28 |
ctctacgattaataatatgaccaatttgatattttat |
64 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15107465 |
ctctacgattaataatatagccaatttgatattttat |
15107429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University