View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_high_15 (Length: 462)
Name: NF12125_high_15
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 5509552 - 5509124
Alignment:
| Q |
18 |
gtatttgtgagaggctcatgagaggttaaggtatacttcaggaggttcaatatctgtataaaatgttaaaacacaaatggtaagaatgaaggttcgagtt |
117 |
Q |
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| T |
5509552 |
gtattagtgagaggctcatgagaggttaaggtatacttcaggaggttcaatatctgtataaaatgttaaaacacaaatggtaagaatgaaggttcgagtc |
5509453 |
T |
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| Q |
118 |
tagaaattatacgtgaga--cctgaataaagagaaatagaactttggtagtgtggaacaatggaacacaacaagagtaaactgtatatttaccagtctcc |
215 |
Q |
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| T |
5509452 |
tagaaattatacctgagagtcctgaataaagagaaatggaactttggtagggtggaacaatggaacacaacaagagtaaactgtatgtttactagtctcc |
5509353 |
T |
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| Q |
216 |
tctaactagttacatttcctaatgacacctctaattattctaacatattcttttttgattttgatattgaataattaggtttcctattactaacagataa |
315 |
Q |
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| T |
5509352 |
tctaactagttacatttcctaatgacacctcta---attctaaca-------ttttgattttgatattgaataattaggttttctatcactaacagataa |
5509263 |
T |
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| Q |
316 |
cattatactatgtcaaatcccactactaactatatatcctaacaaatatcgtaattgcagccacaatgtaatggttttaggtacctcgacaacgacatta |
415 |
Q |
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| T |
5509262 |
cattatactatgtcaaatcccagtactaactatatatcctaacaaatatcgtaattgcagccacaatgtaatggttttagatatctcgacaacgacatta |
5509163 |
T |
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| Q |
416 |
atggcaactgcaaatacgaccgcattttaccgcaatata |
454 |
Q |
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| T |
5509162 |
atggcaactgcaaatacagccgcattttacagtaatata |
5509124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 5458146 - 5458225
Alignment:
| Q |
18 |
gtatttgtgagaggctcatgagaggttaaggtatacttcaggaggttcaatatctgtataaaatgttaaaacacaaatgg |
97 |
Q |
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| T |
5458146 |
gtatttgtgagaggctcatgagaggttaaggtatacttgaggaggttcaatatctatacaaaatgttaaaacataaatgg |
5458225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 5488866 - 5488780
Alignment:
| Q |
18 |
gtatttgtgagaggctcatgagaggttaaggtatacttcaggaggttcaatatctgtataaaatgttaaaacacaaatggtaagaat |
104 |
Q |
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| T |
5488866 |
gtatttgtcaaaggctcacgagaggttaaggcatacttgagaaggttcaatatctgtacaaaatgttaaaacacaaaaggtaagaat |
5488780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 5436254 - 5436337
Alignment:
| Q |
18 |
gtatttgtgagaggctcatgagaggttaaggtatacttcaggaggttcaatatctgtataaaatgttaaaacacaaatggtaag |
101 |
Q |
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| T |
5436254 |
gtatttgtcaaaggctcatgagaggttaaggtatgcttgaggaggttcaatatctatagaatatgttaaaacacaaatagtaag |
5436337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 5996718 - 5996775
Alignment:
| Q |
18 |
gtatttgtgagaggctcatgagaggttaaggtatacttcaggaggttcaatatctgta |
75 |
Q |
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| T |
5996718 |
gtatttgtcagaggctcatgagaggttaaggtgtacttgaggaggttcagcatctgta |
5996775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 5631707 - 5631659
Alignment:
| Q |
18 |
gtatttgtgagaggctcatgagaggttaaggtatacttcaggaggttca |
66 |
Q |
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| T |
5631707 |
gtatttgtcagaggctcatgagaggttaaggtgtacttgaggaggttca |
5631659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 5993992 - 5994047
Alignment:
| Q |
18 |
gtatttgtgagaggctcatgagaggttaaggtatacttcaggaggttcaatatctgt |
74 |
Q |
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|||||||| | |||||| |||||||||||||| ||||| |||| ||||||||||||| |
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| T |
5993992 |
gtatttgttaaaggctcgtgagaggttaaggtgtactttagga-gttcaatatctgt |
5994047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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