View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12125_high_16 (Length: 459)
Name: NF12125_high_16
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 2821108 - 2821545
Alignment:
| Q |
18 |
aaacttaaccacaaacttcgaatgacaataataatcaactatat-----ggatccaaattaacataaaaataaaaatggggccaagcatgcttcacgaga |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821108 |
aaacttaaacacaaacttcgaatgacaataataatcaactatatcatatggatccaaattaacataaaaataaaaatggggccaagcatgcttcacgaga |
2821207 |
T |
|
| Q |
113 |
attattaaaacaagtagaatgtgttaggaacataccaaccccagaaggaccagtcagggaaaacaatatcttgtgtccaccgatcagcacagtaaccaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821208 |
attattaaaacaagtagaatgtgttaggaacataccaaccccagaaggaccagtcagggaaaacaatatcttgtgtccaccgatcagcacagtaaccaaa |
2821307 |
T |
|
| Q |
213 |
aacaggtggtgggtccaagccaatgggcacaacaggcttatcattgcaatcaaacatgagttccaagtctggaattttaccagggtactttctcagtaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821308 |
aacaggtggtgggtccaagccaatgggcacaacaggcttatcattgcaatcaaacatgagttccaagtctggaattttaccagggtactttctcagtaat |
2821407 |
T |
|
| Q |
313 |
tgcagaataccccaaacggtgaaaacatcacgtgtttgtatagcttctttgttcttgtatttctctaaatacccttttccattttttaccaccaacctaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821408 |
tgcagaataccccaaacggtgaaaacatcacgtgtttgtatagcttctttgttcttgtatttctctaaatacccttttccattttttaccaccaacctaa |
2821507 |
T |
|
| Q |
413 |
aatgcgccgttttctttgccttttccaccatttctctg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821508 |
aatgcgccgttttctttgccttttccaccatttctctg |
2821545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 11808895 - 11808810
Alignment:
| Q |
241 |
acaacaggcttatcattgcaatcaaacatgagttccaagtctggaattttaccagggtactttctcagtaattgcagaatacccca |
326 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||| || || | || ||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
11808895 |
acaacaggcttatcttcacaatcaaacataagttccaaatcaggcaacttgccagggtacaatctcaataattgcaaaatacccca |
11808810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University