View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_high_2 (Length: 748)
Name: NF12125_high_2
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_high_2 |
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| [»] scaffold0050 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 686; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 19 - 720
Target Start/End: Complemental strand, 41922065 - 41921364
Alignment:
| Q |
19 |
aagatgcatcatctacgggcaaaccgcccaagtcaagaagagataagtgtttaagagaggcaagaagcttgactccattggcagtgacactggttttgga |
118 |
Q |
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| T |
41922065 |
aagatgcatcatctacgggcaaaccgcccaagtcaagaagagataagtgtttaagagaggcaagaagcttgactccattggcagtgacactggttttgga |
41921966 |
T |
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| Q |
119 |
aatgcgcaacttcaccaaattaggaacagaaaggatatgattaattccagcatcattaaatttggagcatctagatagatccaagtctttaaggctattc |
218 |
Q |
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| T |
41921965 |
aatgcgcaacttcaccaaattaggaacagaaaggatatgattaattccagcatcattaaatttggagcatctagatagatccaagtctttaaggctattc |
41921866 |
T |
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| Q |
219 |
attcctgaaataggccaaagagcagaagaattgattcgatgacattcagcaaggttcaaataacgtaaatggcgaaatgctcctaaatatgccatccatt |
318 |
Q |
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| T |
41921865 |
attcctgaaataggccaaagagcagaagaattgattcgatgacattcagaaaggttcaaataacgtaaatggcgaaatgctcctaaatatgccatccatt |
41921766 |
T |
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| Q |
319 |
ctgcatccacggagttttctcctctcaaatcaacctcttccacactgtgtttgaaaatctcgaggagagatgggtggaggagacggcgagtgatgaggcg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921765 |
ctgcatccacggagttttctcctctcaaatcaacctcttccacactgtttttgaaaatctcgaggagagatgggtggaggagacggcgagtgatgaggcg |
41921666 |
T |
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| Q |
419 |
gcggagaagagcgtcggcgagaggagaaggtaagcaatcgagagatcgtctttgtaaccgccatttatcaacggtttctctggttttacaagctgcgtca |
518 |
Q |
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| T |
41921665 |
gcggagaagagcgtcggcgagaggagaaggtaagcaatcgagagatcgtctttgtaaccgccatttgtcaacggtttctctggttttacaagctgcgtca |
41921566 |
T |
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| Q |
519 |
atgcagagttcaaccaatgatatcatctttctctctgtttgttattgtgattgtgatttacgaaatgaaattggattattggaattcagaagaagagaaa |
618 |
Q |
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| T |
41921565 |
atgcagagttcaaccaatgatatcatctttctctctgtttgttattgtgattgtgatttacgaaatgaaattgaattattggaattcagaagaagagaaa |
41921466 |
T |
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| Q |
619 |
acaaaaatgacttgattgtttgtttattcaggacgaagcttccttctttgaacatctcaacatgggcctcgtcatcccatttgggccttaatacactgcc |
718 |
Q |
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| T |
41921465 |
acaaaaatgacttgattgtttgtttattcaggacgaagcttccttctttgaacatctcaacatgggcctcgtcatcccatttgggccttaatacactgcc |
41921366 |
T |
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| Q |
719 |
ag |
720 |
Q |
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|| |
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| T |
41921365 |
ag |
41921364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 248 - 401
Target Start/End: Complemental strand, 44886 - 44733
Alignment:
| Q |
248 |
attgattcgatgacattcagcaaggttcaaataacgtaaatggcgaaatgctcctaaatatgccatccattctgcatccacggagttttctcctctcaaa |
347 |
Q |
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||||||||||| ||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |||| || |||| || ||||||||| |
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| T |
44886 |
attgattcgatcacactcagcaatgttcaaataacgcaaatggcgaaatgctcacaaatatgccatccattctacatcgacaaagttatcgcctctcaaa |
44787 |
T |
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| Q |
348 |
tcaacctcttccacactgtgtttgaaaatctcgaggagagatgggtggaggaga |
401 |
Q |
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| T |
44786 |
tcaacctcttccacgctgtgtttgaaaacctcgaggagggatgagtgaaggaga |
44733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 185
Target Start/End: Complemental strand, 45037 - 44912
Alignment:
| Q |
63 |
aagtgtttaagagaggcaagaagcttgactccattggcagtgacactggttttggaaatgcgc--aacttcaccaaattaggaa-cagaaaggatatgat |
159 |
Q |
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| T |
45037 |
aagtgtttaagtgagacaagaagcttgattcctttggcagtgatgctggttttggaaatgtgcataacttcttcgaatcaggaattaaaaatgatatgat |
44938 |
T |
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| Q |
160 |
taattccagcatcattaaatttggag |
185 |
Q |
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| T |
44937 |
taatttcagcatcattaactttggag |
44912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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