View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12125_high_24 (Length: 373)

Name: NF12125_high_24
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12125_high_24
NF12125_high_24
[»] chr4 (8 HSPs)
chr4 (37-363)||(9594554-9594880)
chr4 (45-360)||(9582761-9583076)
chr4 (45-360)||(9588456-9588771)
chr4 (109-316)||(9573376-9573585)
chr4 (84-349)||(9603371-9603636)
chr4 (134-363)||(9568256-9568488)
chr4 (174-270)||(54295949-54296045)
chr4 (173-323)||(37894927-37895075)
[»] chr6 (17 HSPs)
chr6 (160-330)||(29152911-29153081)
chr6 (164-318)||(32745702-32745856)
chr6 (160-326)||(32973468-32973634)
chr6 (173-318)||(29123217-29123362)
chr6 (160-342)||(34279334-34279518)
chr6 (188-357)||(29144372-29144541)
chr6 (175-323)||(23216810-23216958)
chr6 (195-327)||(29149702-29149834)
chr6 (160-328)||(34281023-34281191)
chr6 (222-345)||(25320121-25320244)
chr6 (222-345)||(26149814-26149937)
chr6 (222-326)||(29299189-29299293)
chr6 (175-325)||(29130392-29130542)
chr6 (216-330)||(34259087-34259201)
chr6 (222-310)||(29136416-29136504)
chr6 (196-303)||(21379301-21379408)
chr6 (236-306)||(29012028-29012098)
[»] chr7 (3 HSPs)
chr7 (197-303)||(42445421-42445527)
chr7 (236-303)||(7792972-7793039)
chr7 (224-280)||(30249029-30249085)
[»] scaffold0054 (2 HSPs)
scaffold0054 (176-323)||(34301-34448)
scaffold0054 (176-323)||(40658-40805)
[»] scaffold0134 (1 HSPs)
scaffold0134 (178-323)||(17092-17237)
[»] chr5 (6 HSPs)
chr5 (173-319)||(27174313-27174459)
chr5 (173-319)||(42782257-42782403)
chr5 (173-241)||(41226999-41227067)
chr5 (195-322)||(37512013-37512140)
chr5 (188-266)||(31788626-31788704)
chr5 (212-272)||(42777123-42777183)
[»] chr8 (1 HSPs)
chr8 (188-313)||(31135828-31135953)
[»] chr2 (2 HSPs)
chr2 (224-280)||(44919370-44919426)
chr2 (245-312)||(13280325-13280392)


Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 37 - 363
Target Start/End: Complemental strand, 9594880 - 9594554
Alignment:
Q  37 cgttaggactccaaatttgtttagggtttctactttttactgatcccaatcactttgcgctttcaatatctcattgcattccaatttacaaccgctcatg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594880 cgttaggactccaaatttgtttagggtttctactttttactgatcccaatcactttgcgctttcaatatctcattgcattccaatttacaaccgctcatg 9594781  T
Q  137 gagtcagtggccgcaaaaaagagaaaggtgagcaccacctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagc 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9594780 gagtcagtggccgcaaaaaagagaaaggtgagcaccacctatatagctgatgatatttccttctccattctatctaaattacctattaaatcttttaagc 9594681  T
Q  237 gatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtcc 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594680 gatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtcc 9594581  T
Q  337 ttattacgacgggggatctctgcttct 363  Q
    |||||||||||||||||||||||||||    
T  9594580 ttattacgacgggggatctctgcttct 9594554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 45 - 360
Target Start/End: Complemental strand, 9583076 - 9582761
Alignment:
Q  45 ctccaaatttgtttagggtttctactttttactgatcccaatcactttgcgctttcaatatctcattgcattccaatttacaaccgctcatggagtcagt 144  Q
    ||||||||||||||||||||||| |||| || | ||||||||||||||| |||||||  |||||| ||||||||||||| |||||||  |||||||||||    
T  9583076 ctccaaatttgtttagggtttctgctttctagtaatcccaatcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagt 9582977  T
Q  145 ggccgcaaaaaagagaaaggtgagcaccacctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaa 244  Q
     || || ||||| |||||||||||||||||||||||| |||| || ||| ||||||| |||||||| ||||| ||| |||||||  |||| || ||||||    
T  9582976 cgctgctaaaaaaagaaaggtgagcaccacctatatacctgatgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaa 9582877  T
Q  245 tgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtccttattacg 344  Q
    ||  |||||||||||||||||||||||| |||||||  |||||||||||||||||||  ||| ||||| |||||||||||||||| ||||||||||||||    
T  9582876 tgcattcgcaaagcatggtctctcttatctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattctcaccaatgtccttattacg 9582777  T
Q  345 acgggggatctctgct 360  Q
    | ||||||||||||||    
T  9582776 atgggggatctctgct 9582761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 45 - 360
Target Start/End: Complemental strand, 9588771 - 9588456
Alignment:
Q  45 ctccaaatttgtttagggtttctactttttactgatcccaatcactttgcgctttcaatatctcattgcattccaatttacaaccgctcatggagtcagt 144  Q
    ||||||||||||||||||||||| |||| || | ||||||||||||||| |||||||  |||||| ||||||||||||| |||||||  |||||||||||    
T  9588771 ctccaaatttgtttagggtttctgctttctagtaatcccaatcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagt 9588672  T
Q  145 ggccgcaaaaaagagaaaggtgagcaccacctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaa 244  Q
     || || ||||| |||||||||||||||||||||||| |||| || ||| ||||||| |||||||| ||||| ||| |||||||  |||| || ||||||    
T  9588671 cgctgctaaaaaaagaaaggtgagcaccacctatatacctgatgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaa 9588572  T
Q  245 tgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtccttattacg 344  Q
    ||  |||||||||||||||||||||||| |||||||  |||||||||||||||||||  ||| ||||| |||||||||||||||| ||||||||||||||    
T  9588571 tgcattcgcaaagcatggtctctcttatctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattctcaccaatgtccttattacg 9588472  T
Q  345 acgggggatctctgct 360  Q
    | ||||||||||||||    
T  9588471 atgggggatctctgct 9588456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 109 - 316
Target Start/End: Original strand, 9573376 - 9573585
Alignment:
Q  109 attgcattccaatttacaaccgctcatggagtcagtggcc-gcaaaaaagagaaaggtgagcaccacctatatagctgacgatattt-ccttctccattt 206  Q
    |||||||| |||||| |||||||  ||||||||||||||  ||| |||| |||||||||||||||||||||||| |||| ||||||| |||||||||||     
T  9573376 attgcattacaatttgcaaccgccaatggagtcagtggcttgcagaaaaaagaaaggtgagcaccacctatatacctgatgatatttgccttctccattc 9573475  T
Q  207 tatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaa 306  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||  ||||||| ||||||| | |||||||||  ||||    
T  9573476 tatccaaattgcctattaaatcttttaagcgatttgaatgtgttcgcaaatcatggtctctgttaattgaaaaccatcactttaagaacatgttttgcaa 9573575  T
Q  307 caatctctta 316  Q
    ||||||||||    
T  9573576 caatctctta 9573585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 84 - 349
Target Start/End: Complemental strand, 9603636 - 9603371
Alignment:
Q  84 aatcactttgcgctttcaatatctcattgcattccaatttacaaccgctcatggagtcagtggccgcaaaaaagagaaaggtgagcaccacctatatagc 183  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||    |||||||| ||||| | ||| ||   |||||  ||||||||||||||| |    
T  9603636 aatcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaacgaaaagggtagcaccacctatatacc 9603537  T
Q  184 tgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgat 283  Q
    ||| |||||| ||||||||||| |||| ||||| ||| |||||||||||||||||||||||||  || | ||| ||||||||||||||| ||| |||  |    
T  9603536 tgatgatattgccttctccattctatccaaattgcctcttaaatcttttaagcgatttgaatgcttttgtaaaccatggtctctcttatctgagaaccgt 9603437  T
Q  284 cacttcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtccttattacgacggg 349  Q
       || |||||||  ||| ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  9603436 agttttatgaacacattctgcaacaatctcttatttaattctcatcgatgtccttattacgacggg 9603371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 134 - 363
Target Start/End: Original strand, 9568256 - 9568488
Alignment:
Q  134 atggagtcagtggccgcaaaaaagagaaaggtgagcaccacctatatagctgacgatatttccttctccattttatctaaattacctattaaatctttta 233  Q
    ||||||||||| || |||||||| |||||||||||||| |||| |||| |||| |||||| ||||||| ||| |||| ||||| ||| |||||||| |||    
T  9568256 atggagtcagtcgctgcaaaaaaaagaaaggtgagcacaacctgtatatctgatgatattgccttctctattctatccaaattgccttttaaatctatta 9568355  T
Q  234 agcgatttgaatgtgttcgcaaagcatggtctc---tcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcaccg 330  Q
    ||||||||||||| ||||| ||| |||||||||   |||||| |||||||  |||||||||||||||||||  ||| ||||| ||||||||||||||| |    
T  9568356 agcgatttgaatgcgttcgtaaatcatggtctctgatcttatctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattctcacag 9568455  T
Q  331 atgtccttattacgacgggggatctctgcttct 363  Q
    || |||||||||||| || | |||||| |||||    
T  9568456 atatccttattacgatggagcatctcttcttct 9568488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 54296045 - 54295949
Alignment:
Q  174 cctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctctt 270  Q
    |||||||| |||| ||||||||||||||||||||||| ||| | ||| ||||||||||||| ||||||||||| ||||| | | |||||||||||||    
T  54296045 cctatatacctgatgatatttccttctccattttatcaaaactgcctcttaaatcttttaaacgatttgaatgcgttcgtagatcatggtctctctt 54295949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 323
Target Start/End: Original strand, 37894927 - 37895075
Alignment:
Q  173 acctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttat 272  Q
    ||||| ||| |||| ||| || ||||||||||| |||| ||| | ||| | |||||||| ||||||||||||||||||| | || |||||||| |  | |    
T  37894927 acctaaatacctgaagatgttgccttctccattctatccaaactccctctcaaatctttgaagcgatttgaatgtgttcactaatcatggtcttt--tgt 37895024  T
Q  273 gtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaatt 323  Q
     | ||||| |||| |||||||||||| |||| |||||| ||||||||||||    
T  37895025 ttcaaaaccatcatttcatgaacatgctccgtaacaatttcttatctaatt 37895075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 160 - 330
Target Start/End: Complemental strand, 29153081 - 29152911
Alignment:
Q  160 aaaggtgagcaccacctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagca 259  Q
    ||||||||||||  | || ||| |||| |||||| ||||||||||| | || ||||| ||| |||||||||| ||||  |||||||||||||||||| ||    
T  29153081 aaaggtgagcacagcatacatatctgatgatattgccttctccattctctcaaaattgcctcttaaatctttcaagcattttgaatgtgttcgcaaatca 29152982  T
Q  260 tggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcaccg 330  Q
    ||||| ||| ||| ||||||  ||||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  29152981 tggtccctcctatctgaaaaacatcacttcatgaacatgttccgcaataatttcttatccaattctcaccg 29152911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 164 - 318
Target Start/End: Complemental strand, 32745856 - 32745702
Alignment:
Q  164 gtgagcaccacctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggt 263  Q
    ||||| |||| ||||||| |||| |||||| ||||||||||  |||| ||| ||||| ||||||||||||| ||||||||||| ||||||||| ||||||    
T  32745856 gtgagtaccaactatatacctgatgatattgccttctccatcctatcaaaactacctcttaaatcttttaaacgatttgaatgcgttcgcaaatcatggt 32745757  T
Q  264 ctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatc 318  Q
    ||||||||| ||||||   ||| |||||||||||||| ||||||||| |||||||    
T  32745756 ctctcttatctgaaaatactcatttcatgaacatgtttcgcaacaatttcttatc 32745702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 326
Target Start/End: Complemental strand, 32973634 - 32973468
Alignment:
Q  160 aaaggtgagcaccacctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagca 259  Q
    ||||||||||||||| |||||  |||| || ||||||||||  ||| |||| ||||| ||| |||||||||| ||||| |||||||||||| | ||| ||    
T  32973634 aaaggtgagcaccacatatatttctgatgaaatttccttctatattctatcaaaattgcctcttaaatctttcaagcgttttgaatgtgtttgtaaatca 32973535  T
Q  260 tggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctc 326  Q
    ||||||||||||| ||||||| | |||||| ||||  ||||| |||||||| | |||||||||||||    
T  32973534 tggtctctcttatctgaaaaccaacacttcgtgaaagtgttctgcaacaatttattatctaattctc 32973468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 318
Target Start/End: Original strand, 29123217 - 29123362
Alignment:
Q  173 acctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttat 272  Q
    ||||||||| |||| |||||| ||||||||||| |||| ||||| ||| ||||||||||||| ||| ||||||  ||||||||| ||||||||||||| |    
T  29123217 acctatatatctgatgatattgccttctccattctatcaaaattgcctcttaaatcttttaaacgagttgaatccgttcgcaaatcatggtctctcttgt 29123316  T
Q  273 gtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatc 318  Q
     |||| |   ||| |||||||||||||||||||||||| |||||||    
T  29123317 ctgaagatactcatttcatgaacatgttccgcaacaatttcttatc 29123362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 160 - 342
Target Start/End: Complemental strand, 34279518 - 34279334
Alignment:
Q  160 aaaggtgagcaccacctatatag--ctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaag 257  Q
    ||||||||||||||| ||||||   |||| |||||| ||||||||||| | || ||||||||| |||||||||| ||| | |||||||||||| | |||     
T  34279518 aaaggtgagcaccacatatatatatctgatgatattgccttctccattctttcaaaattacctcttaaatctttcaagagttttgaatgtgtttgtaaat 34279419  T
Q  258 catggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtccttatta 342  Q
    |||||| ||| |||| ||||||  ||||||||||||||||||||| |||  || |  ||||||||||||| || ||| |||||||    
T  34279418 catggtatcttttatctgaaaatcatcacttcatgaacatgttccacaaggatttggtatctaattctcatcgttgttcttatta 34279334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 188 - 357
Target Start/End: Original strand, 29144372 - 29144541
Alignment:
Q  188 gatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcact 287  Q
    |||||| |||| |||||| |||| ||||| ||| |||||||||| |||||||||| ||| ||||| ||| | |||| |||||||| |||| |   ||| |    
T  29144372 gatattgccttatccattctatcgaaattgcctcttaaatctttgaagcgatttggatgcgttcgtaaatcttggtatctcttatttgaagatactcatt 29144471  T
Q  288 tcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtccttattacgacgggggatctct 357  Q
    ||||||||||||||||||||||| ||||||||||||  ||  |  |||||||||||||||| | ||||||    
T  29144472 tcatgaacatgttccgcaacaatttcttatctaatttgcattgtggtccttattacgacggagcatctct 29144541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 23216958 - 23216810
Alignment:
Q  175 ctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgt 274  Q
    ||||||| ||||||||||   ||| |||||| |||| || |||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||  |    
T  23216958 ctatatacctgacgatataagcttatccattctatcgaagttacctcttaaatctttgaagagatttgaatgtgttcgcaaatcatggtctctcttaatt 23216859  T
Q  275 gaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaatt 323  Q
    || ||   ||| |||||||||||||| ||||| ||  ||||||||||||    
T  23216858 gataattctcatttcatgaacatgtttcgcaataacttcttatctaatt 23216810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 327
Target Start/End: Complemental strand, 29149834 - 29149702
Alignment:
Q  195 ccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaa 294  Q
    ||||||||||| | || ||||| ||| |||||||||||||  |||||||||| ||||||||| ||||||||||||| | ||| ||  ||||||||||||     
T  29149834 ccttctccattctctcaaaattgcctcttaaatcttttaactgatttgaatgcgttcgcaaatcatggtctctcttgtctgagaataatcacttcatgag 29149735  T
Q  295 catgttccgcaacaatctcttatctaattctca 327  Q
    |||||| ||| ||||| |||||| |||||||||    
T  29149734 catgtttcgccacaatttcttatgtaattctca 29149702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 328
Target Start/End: Original strand, 34281023 - 34281191
Alignment:
Q  160 aaaggtgagcaccacctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagca 259  Q
    ||||||||||||| | || ||| |||| |||||| ||||||| ||| | || ||||| ||| |||||||||| ||||| ||||| ||| |||||||| ||    
T  34281023 aaaggtgagcaccgcatacatatctgatgatattgccttctctattctctcaaaattgcctcttaaatctttcaagcgttttgagtgtcttcgcaaatca 34281122  T
Q  260 tggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcac 328  Q
    |||||    |||||| ||||| ||||||||||| |||||||||||  |||| ||||||| |||||||||    
T  34281123 tggtccactttatgtaaaaaccatcacttcatggacatgttccgctgcaatttcttatccaattctcac 34281191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 25320244 - 25320121
Alignment:
Q  222 ttaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaa 321  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||| ||||||| ||| ||| ||||||||| ||||||||||||||  ||| |||| || ||    
T  25320244 ttaaatcttttaagcgatttcaatgtattcgaaaatcatggtccctcttatttgagaaccatcacttcaagaacatgttccgcacgaatttcttttccaa 25320145  T
Q  322 ttctcaccgatgtccttattacga 345  Q
    ||||||| | ||| ||||||||||    
T  25320144 ttctcactgttgttcttattacga 25320121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 26149937 - 26149814
Alignment:
Q  222 ttaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaa 321  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||| ||||||| ||| ||| ||||||||| ||||||||||||||  ||| |||| || ||    
T  26149937 ttaaatcttttaagcgatttcaatgtattcgaaaatcatggtccctcttatttgagaaccatcacttcaagaacatgttccgcacgaatttcttttccaa 26149838  T
Q  322 ttctcaccgatgtccttattacga 345  Q
    ||||||| | ||| ||||||||||    
T  26149837 ttctcactgttgttcttattacga 26149814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 29299189 - 29299293
Alignment:
Q  222 ttaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaa 321  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| | ||||||  |  ||||||||| ||||||  ||| |||| ||||||| ||    
T  29299189 ttaaatcttttaagcgttttgaatgtgttcgcaaatcatggtctctcttgtttgaaaatcaggacttcatgaccatgttttgcagcaatttcttatccaa 29299288  T
Q  322 ttctc 326  Q
    |||||    
T  29299289 ttctc 29299293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 29130392 - 29130542
Alignment:
Q  175 ctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgt 274  Q
    ||||||| || | ||||||  |||||||||| | || || || ||| |||||||||| |||||||||||||  ||||| ||| ||||||||||||| | |    
T  29130392 ctatatacctcatgatattcacttctccattctctcaaagttgcctcttaaatctttcaagcgatttgaatccgttcgtaaatcatggtctctcttgtat 29130491  T
Q  275 gaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattct 325  Q
    |||||   |   |||||||||||||||| ||||| ||||||||||||||||    
T  29130492 gaaaatagtttgttcatgaacatgttccacaacagtctcttatctaattct 29130542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 34259201 - 34259087
Alignment:
Q  216 tacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctctt 315  Q
    ||||| |||| ||||| |||||||||| ||| ||||| ||| |||||||||||||||   || ||  ||  |||||||||||||||||||||||| || |    
T  34259201 tacctcttaagtctttaaagcgatttggatgcgttcgtaaatcatggtctctcttattacaagacactcgtttcatgaacatgttccgcaacaatttcat 34259102  T
Q  316 atctaattctcaccg 330  Q
    |||||| ||||||||    
T  34259101 atctaactctcaccg 34259087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 29136416 - 29136504
Alignment:
Q  222 ttaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaat 310  Q
    |||||||||| |||||  ||||||| ||| ||||| ||||||||||||||| ||||||   ||  ||||||||||||||||||||||||    
T  29136416 ttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcgtttcatgaacatgttccgcaacaat 29136504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 303
Target Start/End: Complemental strand, 21379408 - 21379301
Alignment:
Q  196 cttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaac 295  Q
    |||||| ||| |||| || |||||| |||||||||| |||||||||| ||| || || ||| ||||||||||||||| |||||||  | | |||||||||    
T  21379408 cttctctattctatcgaagttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatgaac 21379309  T
Q  296 atgttccg 303  Q
    ||| ||||    
T  21379308 atggtccg 21379301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 29012028 - 29012098
Alignment:
Q  236 cgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaa 306  Q
    ||||| |||| |||||||||| ||||||||||||| | ||||||   ||| |||||||||||||| |||||    
T  29012028 cgattcgaatctgttcgcaaatcatggtctctcttgtttgaaaatactcatttcatgaacatgtttcgcaa 29012098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 42445421 - 42445527
Alignment:
Q  197 ttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaaca 296  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| |||   ||||||||||||| ||||||| |||| ||||||||||    
T  42445421 ttctccattatatcaaaattacctcttaaatcttttaagcgatttgaatgtgttcgtaaattgtggtctctcttatctgaaaaccatcatttcatgaaca 42445520  T
Q  297 tgttccg 303  Q
    |||||||    
T  42445521 tgttccg 42445527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 7792972 - 7793039
Alignment:
Q  236 cgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccg 303  Q
    |||||| |||||||||||| | |||||||  |||||  ||||||| |||| |||||||||||||||||    
T  7792972 cgatttcaatgtgttcgcatatcatggtcagtcttacttgaaaaccatcatttcatgaacatgttccg 7793039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 30249029 - 30249085
Alignment:
Q  224 aaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaac 280  Q
    |||||||| ||||| ||||||||||  | |||| ||||||||||||||| |||||||    
T  30249029 aaatctttaaagcgttttgaatgtgcacacaaaacatggtctctcttatttgaaaac 30249085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 323
Target Start/End: Complemental strand, 34448 - 34301
Alignment:
Q  176 tatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtg 275  Q
    |||||| | ||||||||||||||| | ||| |||| ||| | ||| |||||||||| || ||||||  ||| ||||| ||| ||||||| ||||||| ||    
T  34448 tatatatcagacgatatttccttcacaattctatccaaactccctcttaaatctttgaaccgatttcgatgcgttcgtaaatcatggtcactcttatttg 34349  T
Q  276 aaaacgatcacttcatgaacatgttccgcaacaatctcttatctaatt 323  Q
    ||||| | ||  ||||||||||| ||||||| ||| |||||| |||||    
T  34348 aaaaccaacatctcatgaacatgatccgcaaaaatttcttatgtaatt 34301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 323
Target Start/End: Complemental strand, 40805 - 40658
Alignment:
Q  176 tatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtg 275  Q
    |||||||| ||||||||||||||| | ||| |||| ||| | ||| || ||||||| || ||||||  ||| ||||| ||| ||||||| ||||||| ||    
T  40805 tatatagcagacgatatttccttcacgattctatccaaactccctcttcaatctttgaaccgatttcgatgcgttcgtaaatcatggtcactcttatttg 40706  T
Q  276 aaaacgatcacttcatgaacatgttccgcaacaatctcttatctaatt 323  Q
    ||||| | ||  ||||||||||| ||||||| ||| |||||| |||||    
T  40705 aaaaccaacatctcatgaacatgatccgcaaaaatttcttatgtaatt 40658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 323
Target Start/End: Complemental strand, 17237 - 17092
Alignment:
Q  178 tatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaa 277  Q
    |||| |||||||||||  ||| |||||| |||| || || ||| |||||||||| ||| |||||||||| ||| ||||| ||||||||||||||  |||     
T  17237 tatacctgacgatattagcttatccattctatcaaagttgcctcttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctcttaattgat 17138  T
Q  278 aacgatcacttcatgaacatgttccgcaacaatctcttatctaatt 323  Q
    ||   | | |||||||||| ||| ||||| ||| ||||||||||||    
T  17137 aattcttatttcatgaacaagtttcgcaataatttcttatctaatt 17092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 319
Target Start/End: Complemental strand, 27174459 - 27174313
Alignment:
Q  173 acctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttat 272  Q
    |||||||||  ||| |||||| ||||||| | | |||| ||||||||| | |||||||| |||||||||| ||| || |||||| |||| || || ||||    
T  27174459 acctatatacatgatgatattaccttctcaaatctatcaaaattacctctgaaatctttgaagcgatttggatgcgtacgcaaatcatgatcacttttat 27174360  T
Q  273 gtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatct 319  Q
     ||||||   ||  |||||||||||| |||| |||||| ||||||||    
T  27174359 ttgaaaatcctcttttcatgaacatggtccgtaacaatttcttatct 27174313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 319
Target Start/End: Original strand, 42782257 - 42782403
Alignment:
Q  173 acctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttat 272  Q
    |||||||||  ||| |||||| ||||||| ||| |||| |||||||| ||||||||||| |||||||||| ||| || || ||| ||||||| ||  |||    
T  42782257 acctatatacatgatgatattaccttctcaattctatcaaaattaccgattaaatctttgaagcgatttggatgcgtacgtaaatcatggtcacttctat 42782356  T
Q  273 gtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatct 319  Q
     ||||||   |   |||||||||||| |||| | |||||||||||||    
T  42782357 ttgaaaatccttttttcatgaacatggtccgtaccaatctcttatct 42782403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 41226999 - 41227067
Alignment:
Q  173 acctatatagctgacgatatttccttctccattttatctaaattacctattaaatcttttaagcgattt 241  Q
    |||||||||  ||| |||||| ||||||| ||| |||| |||||||| ||||||||||| |||||||||    
T  41226999 acctatatacatgatgatattaccttctcaattctatcaaaattaccgattaaatctttaaagcgattt 41227067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 322
Target Start/End: Original strand, 37512013 - 37512140
Alignment:
Q  195 ccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaa 294  Q
    |||||||||||||||| ||| | ||| | |||||||| || |||||||||| |||  ||||| |||||||||  ||   |||||||  ||| || ||||     
T  37512013 ccttctccattttatcaaaactgcctctcaaatctttgaaacgatttgaatatgtatgcaaatcatggtctcaattgcttgaaaaccctcaatttatgag 37512112  T
Q  295 catgttccgcaacaatctcttatctaat 322  Q
    ||||||| |||||||| |||||| ||||    
T  37512113 catgttcagcaacaatttcttatttaat 37512140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 31788626 - 31788704
Alignment:
Q  188 gatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctc 266  Q
    |||||| ||||||| ||| |||| ||| | || ||||||||||| || ||||||||||| || |||||| |||||||||    
T  31788626 gatattgccttctctattctatcaaaactccccattaaatctttgaaacgatttgaatgcgtacgcaaatcatggtctc 31788704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 42777123 - 42777183
Alignment:
Q  212 aaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttat 272  Q
    |||||||||||||||||    || ||||||||||||||  ||||| |||||||||||||||    
T  42777123 aaattacctattaaatcaaccaaacgatttgaatgtgtgtgcaaatcatggtctctcttat 42777183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 313
Target Start/End: Complemental strand, 31135953 - 31135828
Alignment:
Q  188 gatatttccttctccattttatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatcact 287  Q
    |||||||||||||| ||| | || || || ||| | ||||  || |||||||||| ||||||  ||||| |||||||||| |||| |||||||  |   |    
T  31135953 gatatttccttctctattatctccaagttgcctttaaaattcttgaagcgatttgcatgtgtatgcaaaccatggtctcttttatttgaaaaccctattt 31135854  T
Q  288 tcatgaacatgttccgcaacaatctc 313  Q
    | ||||||||||||||||||||||||    
T  31135853 ttatgaacatgttccgcaacaatctc 31135828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 44919426 - 44919370
Alignment:
Q  224 aaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaac 280  Q
    ||||||||||||| |||||||||||| || ||| ||||| ||||||||| |||||||    
T  44919426 aaatcttttaagccatttgaatgtgtacgtaaatcatgggctctcttatttgaaaac 44919370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 13280325 - 13280392
Alignment:
Q  245 tgtgttcgcaaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatct 312  Q
    |||||||||||| |||||||||  |||| |||||||  |   ||||||||||||||||||||||||||    
T  13280325 tgtgttcgcaaatcatggtctcatttatttgaaaaccctattttcatgaacatgttccgcaacaatct 13280392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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