View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_high_25 (Length: 371)
Name: NF12125_high_25
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_high_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 28035829 - 28035459
Alignment:
| Q |
1 |
attacagaatcaagagctcttttgtgtttcgcggttttgttggaaaagggtacagatgatgtgcaacattattcagcaatggctttgatggaaataacat |
100 |
Q |
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| T |
28035829 |
attacagaatcaagagctcttttgtgttttgcggttttgttggaaaagggtactgatgatgtgcaacattattcagcaatggctttgatggaaataacat |
28035730 |
T |
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| Q |
101 |
ctgtggcagcagaacatgcagaattgagacgctctgctttcaaaccaactgcccctgctgcaaaagctgtggtggaacagtttctcaaagttgtcgaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28035729 |
ctgtggcagcagaacatgcagaattgagacgttctgctttcaaaccaactgcccctgctgcaaaagctgtggtggaacagtttctcaaagttgttgaaaa |
28035630 |
T |
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| Q |
201 |
aggtgactccgaggatttgctcataccttgtgttaaagctattggtaacttagcgaggacttttagagcaactgaaacaagattcattgcgccattggtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28035629 |
aggtgactccgaggatttgctcataccttgtgttaaagctattggtaacttagcaaggacttttagagcaactgaaacaagattcattgcgccattggtg |
28035530 |
T |
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| Q |
301 |
aagttgctcgatgaaacagaaccggtgatttctacggaagcatcaaatgctctcatcaaatttgctgagac |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28035529 |
aagttgctcgatgaaacagaaccggtgatttctacggaagcatcaaaagctctcatcaaatttgctgagac |
28035459 |
T |
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