View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_high_26 (Length: 356)
Name: NF12125_high_26
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 338
Target Start/End: Original strand, 42511229 - 42511571
Alignment:
| Q |
2 |
agagactacgggccaccttgatgataagcaacacccatactatctgttgcaagcaataaacgaagttcagcgggagccgaaaggattgagcataatcaat |
101 |
Q |
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| T |
42511229 |
agagactacgggccaccacgatgataagcaacacctatactgtatgttgcaagcaataaacgaagctcagcgggagccgaaaggattgagcataatcaac |
42511328 |
T |
|
| Q |
102 |
agatcgctcgtagaccttgttttaagtttggctaaaaagtcaaaatacatattacctctcatacattatgatataatagcta-----tctcatttccatt |
196 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
42511329 |
agatcactcgtagaccttgttccaagtttggctaaaaagtcaaaatacatattacctctcatacattatgatataatagctattacctctcatttgcatt |
42511428 |
T |
|
| Q |
197 |
ccgtatctcatacattcaactactataaaatgtttaataagttatgaaacatttcatatggggagataaagaagaggcccagtagctgcaaggttgtgac |
296 |
Q |
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| T |
42511429 |
cggtatctcatacattcaactactataaaatgtttaatcagttatgaaacatttcatatggggagataaagaagaggcccagcagctgcaaggttgtgac |
42511528 |
T |
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| Q |
297 |
agtgggtgaaaagaaggtttccatc-aataatatacaaaaatt |
338 |
Q |
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|
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| T |
42511529 |
agtgggtgaaaagaaggtttccatcaaataatatacaaaaatt |
42511571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 31416078 - 31416123
Alignment:
| Q |
21 |
gatgataagcaacacccatactatctgttgcaagcaataaacgaag |
66 |
Q |
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| T |
31416078 |
gatgataagcaacacccatactgtctgccgtaagcaataaacgaag |
31416123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 14623909 - 14623954
Alignment:
| Q |
21 |
gatgataagcaacacccatactatctgttgcaagcaataaacgaag |
66 |
Q |
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||||||||||||||||||||||||||| | | ||||||||| |||| |
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| T |
14623909 |
gatgataagcaacacccatactatctgcttcgagcaataaaggaag |
14623954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 3776703 - 3776748
Alignment:
| Q |
21 |
gatgataagcaacacccatactatctgttgcaagcaataaacgaag |
66 |
Q |
| |
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|||||||||||||||||||||| |||| || ||||||||| ||||| |
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| T |
3776703 |
gatgataagcaacacccatactgtctgctgtaagcaataagcgaag |
3776748 |
T |
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