View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12125_high_32 (Length: 334)

Name: NF12125_high_32
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12125_high_32
NF12125_high_32
[»] chr7 (1 HSPs)
chr7 (16-316)||(2311221-2311521)
[»] chr4 (10 HSPs)
chr4 (179-303)||(30271223-30271347)
chr4 (179-303)||(30280842-30280966)
chr4 (179-303)||(30304290-30304414)
chr4 (176-283)||(30264349-30264456)
chr4 (176-283)||(30287732-30287839)
chr4 (171-285)||(30032299-30032413)
chr4 (179-285)||(30220274-30220380)
chr4 (171-285)||(30048545-30048659)
chr4 (171-285)||(30062886-30063000)
chr4 (171-285)||(30228684-30228798)
[»] scaffold0024 (2 HSPs)
scaffold0024 (180-270)||(79534-79624)
scaffold0024 (180-234)||(72506-72560)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 2311221 - 2311521
Alignment:
Q  16 tgtgaaaaaaccaatatttgcaaaaggnnnnnnngtggaattctatgagaaatcttttcaagattatttgtcaaccatagcaattgagccattacctcaa 115  Q
    ||||||||||||||||||| |||||||       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311221 tgtgaaaaaaccaatattttcaaaaggaaaaaaagtggaattctatgacaaatcttttcaagattatttgtcaaccatagcaattgagccattacctcaa 2311320  T
Q  116 gggaaaccattatgggaagttcacatagtaaactaccctacaaaaaattcattaggcacaataatattcaaacttcaccatgcacttggagatggttatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311321 gggaaaccattatgggaagttcacatagtaaactaccctacaaaaaattcattaggcacaataatattcaaacttcaccatgcacttggagatggttatt 2311420  T
Q  216 ctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtcttttccttctcttaaaccatcaaaattagaaccttataa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311421 ctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtcttttccttctcttaaaccatcaaaattagaaccttataa 2311520  T
Q  316 t 316  Q
    |    
T  2311521 t 2311521  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 30271347 - 30271223
Alignment:
Q  179 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 278  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | |||||||| || ||||||||||||||||    
T  30271347 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtctt 30271248  T
Q  279 ttccttctcttaaaccatcaaaatt 303  Q
    ||||||| |  ||||||||| ||||    
T  30271247 ttccttcacgcaaaccatcacaatt 30271223  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 303
Target Start/End: Original strand, 30280842 - 30280966
Alignment:
Q  179 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 278  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | |||||||| || ||||||||||||||||    
T  30280842 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtctt 30280941  T
Q  279 ttccttctcttaaaccatcaaaatt 303  Q
    ||||||| |  ||||||||| ||||    
T  30280942 ttccttcacgcaaaccatcacaatt 30280966  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 30304414 - 30304290
Alignment:
Q  179 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 278  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | | |||||| || ||||||||||||||||    
T  30304414 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagttgatgacccttctcttcctttgtctt 30304315  T
Q  279 ttccttctcttaaaccatcaaaatt 303  Q
    ||||||| |  ||||||||| ||||    
T  30304314 ttccttcacgcaaaccatcacaatt 30304290  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 30264456 - 30264349
Alignment:
Q  176 ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgt 275  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||  | ||||||||||| |||||||||||||    
T  30264456 ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt 30264357  T
Q  276 cttttcct 283  Q
    ||||||||    
T  30264356 cttttcct 30264349  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 30287732 - 30287839
Alignment:
Q  176 ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgt 275  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||  | ||||||||||| |||||||||||||    
T  30287732 ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt 30287831  T
Q  276 cttttcct 283  Q
    ||||||||    
T  30287832 cttttcct 30287839  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 30032413 - 30032299
Alignment:
Q  171 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 270  Q
    |||| ||||||||||||||||| ||||||||||| || ||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30032413 gcaccataatattcaaacttcatcatgcacttggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30032314  T
Q  271 tttgtcttttccttc 285  Q
    ||| |||||||||||    
T  30032313 tttatcttttccttc 30032299  T

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Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 30220274 - 30220380
Alignment:
Q  179 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 278  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||| | ||||    
T  30220274 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatctt 30220373  T
Q  279 ttccttc 285  Q
    |||||||    
T  30220374 ttccttc 30220380  T

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Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 30048659 - 30048545
Alignment:
Q  171 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 270  Q
    |||| ||||||||||||||||| |||| |||||| |||||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30048659 gcaccataatattcaaacttcatcatggacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30048560  T
Q  271 tttgtcttttccttc 285  Q
    | | |||||||||||    
T  30048559 tctatcttttccttc 30048545  T

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Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 30063000 - 30062886
Alignment:
Q  171 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 270  Q
    |||| ||||||||||||||||| |||| |||||| |||||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30063000 gcaccataatattcaaacttcatcatggacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30062901  T
Q  271 tttgtcttttccttc 285  Q
    | | |||||||||||    
T  30062900 tctatcttttccttc 30062886  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 30228798 - 30228684
Alignment:
Q  171 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 270  Q
    |||| ||||||||||||||| | ||||||||||| |||||||| ||||| ||| |||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30228798 gcaccataatattcaaacttaatcatgcacttggtgatggttactctctcatgagtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30228699  T
Q  271 tttgtcttttccttc 285  Q
    | | |||||||||||    
T  30228698 tctatcttttccttc 30228684  T

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Target: scaffold0024 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 79624 - 79534
Alignment:
Q  180 tattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 270  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| || || | |||||| | || ||||||||    
T  79624 tattcaaacttcatcatgcacttggagatggttactctctaatgggtgcacttctttcatgtttagaaagagctgataacccttctcttcc 79534  T

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Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 72560 - 72506
Alignment:
Q  180 tattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttct 234  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| || |||||    
T  72560 tattcaaacttcatcatgcacttggagatggttactctctaatgggagctcttct 72506  T

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