View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12125_high_33 (Length: 332)

Name: NF12125_high_33
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12125_high_33
NF12125_high_33
[»] chr4 (5 HSPs)
chr4 (19-310)||(17435448-17435744)
chr4 (237-310)||(30305828-30305901)
chr4 (235-310)||(4513408-4513483)
chr4 (237-310)||(3161051-3161124)
chr4 (237-310)||(39401030-39401103)
[»] chr1 (3 HSPs)
chr1 (237-310)||(12613206-12613279)
chr1 (237-310)||(13763790-13763863)
chr1 (239-299)||(13152942-13153002)
[»] chr3 (2 HSPs)
chr3 (237-310)||(46767372-46767445)
chr3 (237-310)||(25883956-25884029)
[»] chr7 (2 HSPs)
chr7 (239-310)||(18503448-18503519)
chr7 (233-274)||(47663381-47663422)
[»] chr5 (1 HSPs)
chr5 (239-294)||(37636844-37636899)
[»] chr8 (2 HSPs)
chr8 (236-310)||(33810668-33810742)
chr8 (235-279)||(32944949-32944993)
[»] chr6 (1 HSPs)
chr6 (235-307)||(20846073-20846145)
[»] chr2 (2 HSPs)
chr2 (235-279)||(12413517-12413561)
chr2 (235-279)||(12425577-12425621)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 17435744 - 17435448
Alignment:
Q  19 tgtgcttaaagaggaagagttcaatgatttcgtaaatgttaaagacttttctttcacataatgttataacaatttaattttgaaatatgtgtcgtacgtt 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17435744 tgtgcttaaagaggaagggttcaatgatttcgtaaatgttaaagacttttctttcacataatgttataacaatttaattttgaaatatgtgtcgtacgtt 17435645  T
Q  119 tatcatgtgaagtatacgggtagcttatagnnnnnnntgtgagtacgagtaacactgttaataaattatatacataaaacgaaaattacaaacactccgt 218  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17435644 tatcatgtgaagtatacgggtagcttatagaaaaaaatgtgagtacgagtaacactgttaataaattatatacatacaacgaaaattacaaacactccgt 17435545  T
Q  219 g-----aactctgttagtagaacaatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  17435544 gagctaaactctgttagtagaacaatgcataatatatacaggggctgaagttcaaaccccgcacaccccacttctctacatgtaaaatgtgtgagct 17435448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 30305828 - 30305901
Alignment:
Q  237 aatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    |||||||  ||||| |||||||||  |||| ||||||| |||| ||||||||| |||| |||||||||||||||    
T  30305828 aatgcattttatatgcaggggctggggttcgaaccccggacacctcacttctccacatttaaaatgtgtgagct 30305901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 4513483 - 4513408
Alignment:
Q  235 acaatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    |||||| |||||||||| | ||| |||||||| |||| | | ||| ||||||||| |||| |||||||||||||||    
T  4513483 acaatgtataatatatagaagggttgaagttcgaacctcatccacctcacttctccacatttaaaatgtgtgagct 4513408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 3161051 - 3161124
Alignment:
Q  237 aatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    |||||||  |||||| | |||||| ||||| || |||| |||| ||||||||| |||| |||||||||||||||    
T  3161051 aatgcattttatatatacgggctgtagttcgaatcccggacacttcacttctccacatttaaaatgtgtgagct 3161124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 39401030 - 39401103
Alignment:
Q  237 aatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    |||||||||||||| ||||||  ||||||||||||| | ||||  |||||||| ||||  || |||||||||||    
T  39401030 aatgcataatatatgcaggggtcgaagttcaaaccctgaacaccacacttctccacattaaatatgtgtgagct 39401103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 12613206 - 12613279
Alignment:
Q  237 aatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    |||||||||||||||||||||| ||   || ||||||| ||||  ||||||||||||| |||||||||||||||    
T  12613206 aatgcataatatatacaggggccgagaatcgaaccccggacaccccacttctctacatttaaaatgtgtgagct 12613279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 13763790 - 13763863
Alignment:
Q  237 aatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    |||||||  ||||| |||||||||  |||| ||||||| | ||  ||||||||||||| |||||||||||||||    
T  13763790 aatgcattttatatgcaggggctggggttcgaaccccggataccccacttctctacatttaaaatgtgtgagct 13763863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 13152942 - 13153002
Alignment:
Q  239 tgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaa 299  Q
    ||||||||||||||| ||| || ||||||| ||||| |||| ||||||||| |||| ||||    
T  13152942 tgcataatatatacatgggttggagttcaatccccggacacctcacttctccacatttaaa 13153002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 46767372 - 46767445
Alignment:
Q  237 aatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    |||||||  ||||| |||||||||| |||||||||||| |||   |||||||| |||| |||||||||||||||    
T  46767372 aatgcattttatatgcaggggctgaggttcaaaccccggacatcccacttctccacatttaaaatgtgtgagct 46767445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 25884029 - 25883956
Alignment:
Q  237 aatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    |||||||||||||| ||||||  |  |||| ||||||| ||||  |||||||| |||| |||||||||||||||    
T  25884029 aatgcataatatatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagct 25883956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 18503519 - 18503448
Alignment:
Q  239 tgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    |||||| ||||| |||||||||| |||| ||||||  ||||  |||||||| |||| |||||||||||||||    
T  18503519 tgcatattatatgcaggggctgaggttcgaaccccagacaccccacttctccacatttaaaatgtgtgagct 18503448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 47663422 - 47663381
Alignment:
Q  233 gaacaatgcataatatatacaggggctgaagttcaaaccccg 274  Q
    |||||||| |||||||||||| || |||||||||||||||||    
T  47663422 gaacaatgtataatatatacaaggtctgaagttcaaaccccg 47663381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 37636899 - 37636844
Alignment:
Q  239 tgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacat 294  Q
    |||||||| ||| |||||||||| |||||||||||||| || ||||||||| ||||    
T  37636899 tgcataatttatgcaggggctgaggttcaaaccccgtatacctcacttctccacat 37636844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 33810668 - 33810742
Alignment:
Q  236 caatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtgagct 310  Q
    ||||||||  ||||| ||||||| |  |||||||||||| ||||  |||||||| |||| |||||||||||||||    
T  33810668 caatgcattttatatgcaggggccggggttcaaaccccggacaccccacttctccacatttaaaatgtgtgagct 33810742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 32944949 - 32944993
Alignment:
Q  235 acaatgcataatatatacaggggctgaagttcaaaccccgtacac 279  Q
    |||||||||||||||| || || ||||||||||||||||| ||||    
T  32944949 acaatgcataatatatgcaaggtctgaagttcaaaccccgcacac 32944993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 20846073 - 20846145
Alignment:
Q  235 acaatgcataatatatacaggggctgaagttcaaaccccgtacacgtcacttctctacatgtaaaatgtgtga 307  Q
    |||||||||||||||| ||| || ||  |||| |||||  |||||  ||||||||||||| ||||||||||||    
T  20846073 acaatgcataatatatgcagtggttggggttcgaaccctatacaccacacttctctacatttaaaatgtgtga 20846145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 12413517 - 12413561
Alignment:
Q  235 acaatgcataatatatacaggggctgaagttcaaaccccgtacac 279  Q
    |||||||||||||||| || || |||| |||||||||||||||||    
T  12413517 acaatgcataatatatgcaaggtctgaggttcaaaccccgtacac 12413561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 12425577 - 12425621
Alignment:
Q  235 acaatgcataatatatacaggggctgaagttcaaaccccgtacac 279  Q
    |||||||||||||||| || || |||| |||||||||||||||||    
T  12425577 acaatgcataatatatgcaaggtctgaggttcaaaccccgtacac 12425621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University