View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_high_4 (Length: 596)
Name: NF12125_high_4
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 12 - 578
Target Start/End: Original strand, 36135991 - 36136555
Alignment:
| Q |
12 |
aacctgtggcgtagcagcgtagcaacagtaaaggtatttaactttaaaacctacatcggaacaattctttttatttaagatgtttctgttacatacgtgt |
111 |
Q |
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| T |
36135991 |
aacctggggcgtagccgcgtagcatcagtaaaggtatataactttaaaaccttcatcggaacaattctttttatttaagatgtttctgttacatacgtgt |
36136090 |
T |
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| Q |
112 |
aagnnnnnnncgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatattcttaagagcaatgatatttttccacttttgagtgtgat |
211 |
Q |
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| T |
36136091 |
aagaaaaaaacgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatattcttaagagcaatgatatttttccacttttgagtgtgat |
36136190 |
T |
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| Q |
212 |
attttgcttgataaattaataaatgtattttctcccattaatgtaattttgataaacaaaatctccaagtataagtaactccaaattatgctgaataata |
311 |
Q |
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| T |
36136191 |
attttgtttgataaattaataaatgtattttctcccattaatgtaattttgataaacaaaatctccaagcataagtaactccaaattatgctgaataata |
36136290 |
T |
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| Q |
312 |
tatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaatacttctgtatcagcaaatcttctcctatatacagtgaatctccaac |
411 |
Q |
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| T |
36136291 |
tatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaatacttctgtatcagcaaatcttctcctatatacagtgaatctccaac |
36136390 |
T |
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| Q |
412 |
tcaacattacaatacttctgtctcaaaatgagaaagtggaccgacctattcttgttgcttctgtattcaattttctagggaaaggttttccagctgtggt |
511 |
Q |
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| T |
36136391 |
tcaacattacaatacttctgtctcaaa--gagaaagtggaccgacctattcttgttgtttctgtattcaattttctagggaaaggttttccagctgtggt |
36136488 |
T |
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| Q |
512 |
caaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccagtgt |
578 |
Q |
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| T |
36136489 |
caaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccagtgt |
36136555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 41337556 - 41337737
Alignment:
| Q |
31 |
tagcaacagtaaaggtatttaactttaaaacctacatcggaacaattctttttatttaagatgtttctgttacatacgtgtaagnnnnnnn-cgttaatt |
129 |
Q |
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| T |
41337556 |
tagcatcagtagaggtatttcactttaaaaccttcattgaaacaattctttt-atcaaagatgattctgttacatacgtgtaagaaaaagaacgttgatt |
41337654 |
T |
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| Q |
130 |
tgttcgctgaatatagaagttgtatgaagtgtctgcagtatattcttaagagcaatgatatttttccacttttgagtgtgata |
212 |
Q |
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| T |
41337655 |
tgttcgctgaatatagaaggtgtatgaagtgtctacagtatattcttaagagcattgatatttttccacttttgagtgtgata |
41337737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 41337746 - 41337843
Alignment:
| Q |
251 |
aatgtaattttgataaacaaaatctccaagtataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcc |
348 |
Q |
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| T |
41337746 |
aatgtaattttgatgaacaaaatctctaagtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgcc |
41337843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 488 - 564
Target Start/End: Original strand, 41339373 - 41339449
Alignment:
| Q |
488 |
agggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttc |
564 |
Q |
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| T |
41339373 |
agggaaaggttttccagccgtggtcgaaatcattgcagatggaaaaatgagcaaccaggtatctaaatggttatttc |
41339449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 574
Target Start/End: Original strand, 22629871 - 22629950
Alignment:
| Q |
492 |
aaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggcca |
574 |
Q |
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| T |
22629871 |
aaaggttttccagccttggtcgaaatcattacaga---agaaattagaaaccgtgtatctatatggctctttctttgtggcca |
22629950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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