View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12125_high_55 (Length: 235)
Name: NF12125_high_55
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_high_55 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 43037221 - 43037320
Alignment:
| Q |
38 |
tggaaggctttctgcgttcagtcaatctacgcagagttaatcggtccctaaggaagccccgaaagggctgccgtccgatgggtacacgaaagtgacgaag |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43037221 |
tggaaggctttctgcgttcagtcaatctacgcagagttaatcggtccctaaggaagccccgaaagggctgccatccgatgggtacacgaaagtgacgaag |
43037320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 739638 - 739539
Alignment:
| Q |
38 |
tggaaggctttctgcgttcagtcaatctacgcagagttaatcggtccctaaggaagccccgaaagggctgccgtccgatgggtacacgaaagtgacgaag |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
739638 |
tggaaggctttctgcgttcagtcaatctacgcagagttaatcggtcccttaggaagccccgaaagggctgccatccgatgggtacacgaaagtgatgaag |
739539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 11592890 - 11592946
Alignment:
| Q |
173 |
gtgaattggatgatcgggccgagggctgccccctcttcccctcactctcctttccct |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11592890 |
gtgaattggatgatcgggccgagggctgccccctcttcccctcactctcctttccct |
11592946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University