View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12125_low_10 (Length: 513)
Name: NF12125_low_10
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_10 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 20 - 513
Target Start/End: Original strand, 36330329 - 36330822
Alignment:
| Q |
20 |
tatagctcctatagttgaaaaccctatatctactttttcataaaaggatatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330329 |
tatagctcctatagttgaaaaccctatatctactttttcataaaaggatatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgaca |
36330428 |
T |
|
| Q |
120 |
tgcttttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctagcattcttctcaattgatt |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36330429 |
tacttttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctaccattcttctcaattgatt |
36330528 |
T |
|
| Q |
220 |
gaaccctaatctttagtttattgtgatcaacaaaatttggattaagaagatcctctatggtaatgagtccatcaccacacacaacaacctcgcaactagg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330529 |
gaaccctaatctttagtttattgtgatcaacaaaatttggattaagaagatcctctatggtaatgagtccatcaccacacacaacaacctcgcaactagg |
36330628 |
T |
|
| Q |
320 |
atcaaaagcatcactcatcatcaacttcttattctctgcattaccttgaaaagtctcagtaggcataccagtaattccttgtatcatcctcacatgtctt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36330629 |
atcaaaagcatcactcatcatcaacttcttattctctgcattaccttgaaaagtctcagtaggcataccagtaattccttctatcatcctcacatgtctt |
36330728 |
T |
|
| Q |
420 |
ccctcagcatttgcatccctctttgttccaatgtaacaatcatcgtcattctcggactcattatcagattgtacattctcatcctaacaataga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36330729 |
ccctcagcatttgcatccctctttgttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaataga |
36330822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 44369556 - 44369613
Alignment:
| Q |
144 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctag |
201 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||||||||||| ||| | |||||||| |
|
|
| T |
44369556 |
accttcctttccaccttcgcttgatctgcctttggaagtggtgcatgaacagttctag |
44369613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 52929497 - 52929692
Alignment:
| Q |
20 |
tatagctcctatagttgaaaaccctatatctactttttcataaaaggatatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| |||| | | ||| || || || ||| ||||||||| | || || ||||||| |
|
|
| T |
52929497 |
tatagctcctatagttgaaaaccctagatctatcttttcatcaaagtacacagtaagagcctccctatttctctgaataatggattgccaccttgtgact |
52929596 |
T |
|
| Q |
120 |
tgcttttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctagcattcttctcaatt |
215 |
Q |
| |
|
|| || |||||||| |||| || ||||||||||||||||| |||||||| |||| ||||||||||| ||| | |||||||| | | ||||||||| |
|
|
| T |
52929597 |
tgtttctttgatatttcatacgccaccttcctttctacctttgcttgatctgcctttggaagtggtgcatgaacagttctagaactattctcaatt |
52929692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 20237921 - 20237864
Alignment:
| Q |
144 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctag |
201 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||||||||||| ||| | |||||||| |
|
|
| T |
20237921 |
accttcctttccaccttcgcttgatctgcctttggaagtggtgcatgaacagttctag |
20237864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University