View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_11 (Length: 491)
Name: NF12125_low_11
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 10069011 - 10069266
Alignment:
| Q |
9 |
cagaacctgtgatgctaaaataacattacaaacctcacaaatttcttttcatttgtagtcatgctttataggaaatacactttacttgaacaacagaaaa |
108 |
Q |
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| T |
10069011 |
cagaacatgtgatgctaaaataacactgcaaacctcacaaatttcttttcatttgtagtcatgctttataggaaatacactttacttgaacaacagaaaa |
10069110 |
T |
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| Q |
109 |
ttcactgcaaccctgcaaaatccatcttgaaattagaatttttgagttcacacataactagnnnnnnnnggtaagctattttatgtatgactataagtgc |
208 |
Q |
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| T |
10069111 |
ttcactgcatccctgaaaaatccatcttgaaattagaatttttgagttcacacataactag-aaaaaaaggtaagctattttatgtatgactataagtgg |
10069209 |
T |
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| Q |
209 |
tgcatggctataaaatcattatccaatttcattatttattttgtttatgtttgtaat |
265 |
Q |
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| T |
10069210 |
tgcatggctataaaatgattatccaatttcattatttaggttgtttatgtttgtaat |
10069266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 310 - 472
Target Start/End: Original strand, 10069424 - 10069586
Alignment:
| Q |
310 |
tagtagaaggaaaaggaaaaacagtaaacaccaccaaggttggttttgatagataagtgagaaaatgaagtttctttttctgttaccttaacaataggaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10069424 |
tagtagaaggaaaaggaaaaacagtaaacaccaccaaggttggttttgatagataagtgagaaaatgaagtttctttttctgttaccttaacaataggaa |
10069523 |
T |
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| Q |
410 |
ccaaagcagagagacgaagagtttaaaactcataaaagtaaagaatatgttgcatgcaacatt |
472 |
Q |
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| T |
10069524 |
ccaaagcagagagacgaagagtttaaaactcataaaagtaaagaatatgttgcatgcaacatt |
10069586 |
T |
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