View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_13 (Length: 481)
Name: NF12125_low_13
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Complemental strand, 43434670 - 43434223
Alignment:
| Q |
20 |
cttcttcccccaacaactattcctcaagaaactcaggtgaggaaaatgatccagcacatacgccaatatcaagttccgctgcagagatatatggcaatga |
119 |
Q |
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| T |
43434670 |
cttcttcccccaacaactattcctcaagaaactcaggtgaggaaaatgatccagcacatacgccaatatcaagttccgctgcagagatatatggcaatga |
43434571 |
T |
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| Q |
120 |
tggatcttcaggtgtgtccttgtcaacaatctatctcgtccctttttgaacattgtcaaaactgtcgcgttctttggttttttgtccatgctttatttat |
219 |
Q |
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| T |
43434570 |
tggatcttcaggtgtgtccttgtcaacaatctatctcgtccctttttgaacattgtcaaaactgtcgcgttctttggttttttgttcatgctttatttat |
43434471 |
T |
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| Q |
220 |
aaatttgaaactcgtctttaatgtaaaaccatatgttattggaagttaattcacatggcctgattggcaatattttgaattgaattctaatgctttcact |
319 |
Q |
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| T |
43434470 |
aaatttgaaactcgtctttaatgtaaaaccatatgttattggaagttaattcacatggcctgattggcaatattttgaattgaattctaatgctttcact |
43434371 |
T |
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| Q |
320 |
ctgatatattgttggttgcaggaaagaaatgaacgtctgttttacaaacttctcattgatcacgttgaagaattactcccaattgtgtatactccaactg |
419 |
Q |
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| T |
43434370 |
ctgatatattgttggttgcaggaaagaaatgaacgtctgttttacaaacttctcattgatcacgttgaagaattactcccaattgtgtatactccaactg |
43434271 |
T |
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| Q |
420 |
ttggtgaggcttgccagaaatacggggacatttttatgcgtccacagg |
467 |
Q |
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| T |
43434270 |
ttggtgaggcttgccagaaatacggggacatttttatgcgtccacagg |
43434223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 441
Target Start/End: Original strand, 4510204 - 4510311
Alignment:
| Q |
334 |
gttgcaggaaagaaatgaacgtctgttttacaaacttctcattgatcacgttgaagaattactcccaattgtgtatactccaactgttggtgaggcttgc |
433 |
Q |
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| T |
4510204 |
gttgtaggagagaaatgaagggctgttttacaagcttcttattgatcatgttgaggagttactcccggttgtttatactccgactgttggtgaagcttgc |
4510303 |
T |
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| Q |
434 |
cagaaata |
441 |
Q |
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| T |
4510304 |
cagaaata |
4510311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 441
Target Start/End: Complemental strand, 43208691 - 43208607
Alignment:
| Q |
357 |
tgttttacaaacttctcattgatcacgttgaagaattactcccaattgtgtatactccaactgttggtgaggcttgccagaaata |
441 |
Q |
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| T |
43208691 |
tgttttacaaacttcttattgacaacgtcgaggaattgctcccaattgtatatactccggttgttggtgaggcttgccaaaaata |
43208607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 4510006 - 4510077
Alignment:
| Q |
61 |
gaaaatgatccagcacatacgccaatatcaagttccgctgcagagatatatggcaatgatggatcttcaggt |
132 |
Q |
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| T |
4510006 |
gaaaatgatccaaaacataagacagtatcaagttccattgcagaagtacatggcaatgatggatcttcaggt |
4510077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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