View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_15 (Length: 465)
Name: NF12125_low_15
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 34340430 - 34339988
Alignment:
| Q |
1 |
ccggcgacagctggttccgtctttacacggctgagtacggtaacgtgcaggatgaagccaacactcgaaaacaccatgcgcgtgttcacacgcgtcacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34340430 |
ccggcgacagctggttccgtctttacacggctgagtacggtaacgtgcaggatgaagccaacactcgaaaacaccatgcgcgtgttcacacgcgtcacct |
34340331 |
T |
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| Q |
101 |
ttcttacagttacctttacgaaaatcaggacacgccgtaccggagtaatgaaacttcctcggatcacggcggcgtgctttctcgccgggatgtgcgtatg |
200 |
Q |
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| T |
34340330 |
ttcttacagttacctttacgaaaatcaggacacgccgtaccggagtaatgaaacttcctcggatcacggcggcgtgctttctcgccgggatgtgcgtatg |
34340231 |
T |
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| Q |
201 |
gacactccgtccagtcatgtgatcttccacgtgcgcatcttcttatcttgaactcgtacatgcggaaatgatcgcatgaatatgcatccaccgttgaatc |
300 |
Q |
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| T |
34340230 |
gacactccgtccagtcatgtgatcttccacgtgcgcatcttcttatcttgaactcgtacatgcggaaatgatcgcatgaatatgcatccaccgttgaatc |
34340131 |
T |
|
| Q |
301 |
cgccgccgccgtcgccgtcgccggagattctaaatcagaatcgttgaactcgtttgacggaagataacgttgaagcgcagcaagtgcttctcggagatag |
400 |
Q |
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| T |
34340130 |
cgccgccgccgtc------gccggagattctaaatcagaatcgttgaactcgtttgacggaagataacgttgaagcgctgcaagtgcttctcggagatag |
34340037 |
T |
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| Q |
401 |
taatcaccggaagagcaatcaccggtggaaaaatctccggcagtgtaat |
449 |
Q |
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| T |
34340036 |
taatcaccggaagagtaatcaccggtggaaaaatctccggcagtgtaat |
34339988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 42926163 - 42926436
Alignment:
| Q |
1 |
ccggcgacagctggttccgtctttacacggctgagtacggtaacgtgcaggatgaagccaacactcgaaaacaccatgcgcgtgttcacacgcgtcacct |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
42926163 |
ccggcgacaactggttccgtctttacacggctgagtacggtaacgcgaaggatgaagccaacactcgaaaacaccatgagcaaactcacacgaatcacct |
42926262 |
T |
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| Q |
101 |
ttcttacagttacctttacgaaaatcaggacacgccgtaccggagtaatgaaacttcctcggatcacggcggcgtgctttctcgccgggatgtgcgtatg |
200 |
Q |
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| T |
42926263 |
ttcttgcaacttcctttacgaaaatcaggacatgaagtgccggagtagttatactttctcgggtcacggcggcgagctttctcgccgggatgagaaaaag |
42926362 |
T |
|
| Q |
201 |
gacactccgtccagtcatgtgatcttccacgtgcgcatcttcttatcttgaactcgtacatgcggaaatgatcg |
274 |
Q |
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| T |
42926363 |
gacactccgtccagtcatgagacctgccacgtgcgcatcgacgaatcttgaactcgaacatgcggaaatgatcg |
42926436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 38748281 - 38748354
Alignment:
| Q |
143 |
gagtaatgaaacttcctcggatcacggcggcgtgctttctcgccgggatgtgcgtatggacactccgtccagtc |
216 |
Q |
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|||||||||||| || |||||||||||||| |||||||| ||||| || ||| ||||||| || |||||||| |
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| T |
38748281 |
gagtaatgaaaccgccgtggatcacggcggcgagctttctcaccggggtgagcgaatggacagtcagtccagtc |
38748354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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