View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_19 (Length: 434)
Name: NF12125_low_19
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 42533457 - 42533856
Alignment:
| Q |
18 |
accttctggtatgtttcccttcagcaacaagaacgattttcaccagaaaattgcaatggctgcagtgcaacaatcagatgctactaccgccgacggaaaa |
117 |
Q |
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| T |
42533457 |
accttctggtatgtttcccttcagcaacaagaacgattttcaccagaaaattgcaatggctgctgtgcaacaatcagatgctactaccgccgacggaaaa |
42533556 |
T |
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| Q |
118 |
acccatttccaacatagtcatcgtcattggtactaactacctctttatactaatacnnnnnnnnnnnnnnnnnnnnnnnatgattttatcctttgatttc |
217 |
Q |
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| T |
42533557 |
acccatttccaacatagtcat------tggtactaactacctctttatactaatactctttttcttcttcttcttcttcatgattttatcctttgatttc |
42533650 |
T |
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| Q |
218 |
cagaaggtgttccttgggtacgttatcatgggaaattcaaaggtctcaatttgaacttgatttgtcctggaaaagatccttcttctggggttgatagtgt |
317 |
Q |
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| T |
42533651 |
cagaaggtgttccttgggtacgttatcatgggaaattcaaaggtctcaatttgaacttgatttgtcctggaaaagatccttcttctggggttgatagtgt |
42533750 |
T |
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| Q |
318 |
tggcaccatatcttctgctcttgttgcatatgttgctattcaagctttgaaacctgatttgatcacctatgctattctgctatagctgcttctgctattc |
417 |
Q |
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| T |
42533751 |
tggcaccatatcttctgctcttgttgcatatgctgctattcaagctttgaaacctgatttgatcatttatgctattctgctatagctgcttctgctattc |
42533850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 55105438 - 55105606
Alignment:
| Q |
214 |
tttccagaaggtgttccttgggtacgttatcatgggaaattcaaaggtctcaatttgaacttgatttgtcctggaaaagatccttcttctggggttgata |
313 |
Q |
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| T |
55105438 |
tttccagaaggtgttccttgggtacgttatcatgggaaattcaaaggtctcaatttgaacttgatttggcctggtaaagatccttcttctggggttgata |
55105537 |
T |
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| Q |
314 |
gtgttggcaccatatcttctgctcttgttgcatatgttgctattcaagctttgaaacctgatttgatca |
382 |
Q |
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| T |
55105538 |
gtgttggcaccatatcctctgctcttgttacatatgctgctattcaatctttcaaacctgatttgatca |
55105606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 55105131 - 55105225
Alignment:
| Q |
69 |
tgcaatggctgcagtgcaacaatcagatgctact---------accgccgacggaaaaacccatttccaacatagtcatcgtcattggtactaact |
155 |
Q |
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| T |
55105131 |
tgcaatggctgctgtgcaacaatcagatgctcctttagcttcaaccaccgacg-aaaaacccatttccaacatcgtcatagtcattggtactaact |
55105225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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