View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12125_low_20 (Length: 428)

Name: NF12125_low_20
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12125_low_20
NF12125_low_20
[»] chr7 (1 HSPs)
chr7 (14-411)||(40748968-40749366)
[»] chr1 (8 HSPs)
chr1 (157-324)||(28496346-28496513)
chr1 (160-339)||(42286842-42287021)
chr1 (158-309)||(50789071-50789222)
chr1 (233-324)||(31644298-31644389)
chr1 (158-311)||(12774660-12774813)
chr1 (236-312)||(4160175-4160251)
chr1 (200-312)||(36989105-36989217)
chr1 (24-58)||(28496780-28496814)
[»] chr4 (1 HSPs)
chr4 (203-312)||(22085758-22085867)
[»] chr8 (2 HSPs)
chr8 (227-300)||(33186527-33186600)
chr8 (233-301)||(5788983-5789051)
[»] chr2 (1 HSPs)
chr2 (236-312)||(42898099-42898175)
[»] chr3 (1 HSPs)
chr3 (159-273)||(52248646-52248760)


Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 40748968 - 40749366
Alignment:
Q  14 cacagaccaacaagaagaagagaaatctaccaggaacaccaggtaatattagtcaaactttttccttt-gataattaacaaataaattagttttgctata 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  40748968 cacaaaccaacaagaagaagagaaatctaccaggaacaccaggtaatattagtcaaactttttccttttgataattaacaaataaattggttttgctata 40749067  T
Q  113 tannnnnnnncttccaaatgtgtactaaatttggattgaaatattacagatccagatgctgaagtcattgctctttctcccaagactctaatggccacga 212  Q
    ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749068 tattttttttcttccaaatgtgtactaaatttggattgaaatattacagatccagatgctgaagtcattgctctttctcccaagactctaatggccacga 40749167  T
Q  213 accgattcgtctgcgaaatatgcaacaaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749168 accgattcgtctgcgaaatatgcaacaaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaag 40749267  T
Q  313 gtccaacaaagaaccaaggaaaaaggtatacatctgcccggagaatacttgtgtccaccacgacgcggctagggccttgggtgacctcaccggaataaa 411  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749268 atccaacaaagaaccaaggaaaaaggtatacatctgcccggagaatacttgtgtccaccacgacgcggctagggccttgggtgacctcaccggaataaa 40749366  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 324
Target Start/End: Complemental strand, 28496513 - 28496346
Alignment:
Q  157 tacagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagat 256  Q
    ||||||||||||||| || ||||||||||| || || ||||| || ||||| || ||| ||||| |||| ||||||||||||||||| ||||||||||||    
T  28496513 tacagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagat 28496414  T
Q  257 cagaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaaggtccaacaaaga 324  Q
    || || ||||| || ||||||||||| |||||||| ||||||||||| |  || || |||||||||||    
T  28496413 caaaaccttcaactacatagaagaggacacaaccttccatggaagcttagacagagatccaacaaaga 28496346  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 339
Target Start/End: Original strand, 42286842 - 42287021
Alignment:
Q  160 agatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatcag 259  Q
    |||||||||||| ||||| || || || |||||||||||||||||||| || ||  ||||  | || ||  | ||||| ||||| || ||||| || ||     
T  42286842 agatccagatgcagaagtgatagcactatctcccaagactctaatggcaacaaatagatttatatgtgaggtttgcaataaagggtttcaaagggagcaa 42286941  T
Q  260 aatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaaggtccaacaaagaaccaaggaaaaaggt 339  Q
    |||||||| |||||||||||||| ||||| || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  42286942 aatcttcaacttcatagaagaggacacaatcttccttggaagctaaagcaaaagtccaacaaagagccaaggagaaaggt 42287021  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 158 - 309
Target Start/End: Complemental strand, 50789222 - 50789071
Alignment:
Q  158 acagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatc 257  Q
    |||||||||||||| || || || || || ||||||||||| |||||||| || ||| | ||  | || ||  ||||||||||||| ||||||||||| |    
T  50789222 acagatccagatgcagaggtgatagcactatctcccaagaccctaatggcaacaaacaggtttatttgtgaggtatgcaacaaagggttccaaagagagc 50789123  T
Q  258 agaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagca 309  Q
    | ||||| |||||||| |||||||| |||||| | || |||||||| |||||    
T  50789122 aaaatctacagcttcacagaagaggacacaacttgccttggaagcttaagca 50789071  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 31644389 - 31644298
Alignment:
Q  233 tgcaacaaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaaggtccaacaaaga 324  Q
    |||||||| || || ||||||||||| || || ||||| ||||| ||||| || ||||||||||||||| | |||||||||  |||||||||    
T  31644389 tgcaacaagggttttcaaagagatcaaaacctacagctacataggagaggacataacctaccatggaagttgaagcaaaggaacaacaaaga 31644298  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 311
Target Start/End: Original strand, 12774660 - 12774813
Alignment:
Q  158 acagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatc 257  Q
    |||||||||||||| ||||| || || || ||||||||||  |||||||| || ||| |||| || || ||| | ||| | ||||| |||||||| || |    
T  12774660 acagatccagatgcagaagtgatagcactatctcccaagagcctaatggcaacaaacagatttgtatgtgaagtgtgccaaaaagggttccaaagggagc 12774759  T
Q  258 agaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaa 311  Q
    | ||| | || || ||||||||||| |||||  | || ||||||||||||||||    
T  12774760 aaaatttacaactacatagaagaggacacaatttgccttggaagctaaagcaaa 12774813  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 4160175 - 4160251
Alignment:
Q  236 aacaaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaag 312  Q
    |||||||| || ||||||||||| ||||||||||||||||  ||||| || ||  | ||||||||||||||| ||||    
T  4160175 aacaaaggttttcaaagagatcaaaatcttcagcttcataagagaggacataatttgccatggaagctaaagaaaag 4160251  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 36989105 - 36989217
Alignment:
Q  200 ctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatgga 299  Q
    |||||||| || ||| ||||||| || |||||||| ||||| || || |||||||| || |||||||| || ||  ||||||| |||||| | || ||||    
T  36989105 ctaatggctacaaacagattcgtatgtgaaatatgtaacaagggttttcaaagagaccaaaatcttcaactgcaccgaagaggacacaacttgccttgga 36989204  T
Q  300 agctaaagcaaag 312  Q
    ||||||| |||||    
T  36989205 agctaaaacaaag 36989217  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 28496814 - 28496780
Alignment:
Q  24 caagaagaagagaaatctaccaggaacaccaggta 58  Q
    |||||||||||||||||| ||||||||||||||||    
T  28496814 caagaagaagagaaatcttccaggaacaccaggta 28496780  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 312
Target Start/End: Complemental strand, 22085867 - 22085758
Alignment:
Q  203 atggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaagc 302  Q
    ||||| |||||||| ||| | || ||||| |||||||| || ||||||||||| |||||| | ||||||||| |  |||| |||||||||||||||||||    
T  22085867 atggcgacgaaccgtttcttatgtgaaatctgcaacaagggtttccaaagagaccagaatttgcagcttcatcggcgaggacacaacctaccatggaagc 22085768  T
Q  303 taaagcaaag 312  Q
    | ||||||||    
T  22085767 tgaagcaaag 22085758  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 33186527 - 33186600
Alignment:
Q  227 gaaatatgcaacaaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaa 300  Q
    |||||||| |||||||| || |||||||||||||||||||| || ||||||||||| || || |||||||||||    
T  33186527 gaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaa 33186600  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 5789051 - 5788983
Alignment:
Q  233 tgcaacaaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaag 301  Q
    ||||||||||| || ||||||||||| |||||||| ||||| ||||||||||| ||  |||||||||||    
T  5789051 tgcaacaaagggtttcaaagagatcaaaatcttcaacttcacagaagaggtcataatttaccatggaag 5788983  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 42898099 - 42898175
Alignment:
Q  236 aacaaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaag 312  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||||| |||||  | ||||||||| | ||||||||    
T  42898099 aacaaaggatttcaaagagatcagaatcttcaacttcataaaagaggacacaatttgccatggaagttgaagcaaag 42898175  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 52248760 - 52248646
Alignment:
Q  159 cagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatca 258  Q
    ||||||||||||||||||| || ||| | || ||||| ||| || | || |||||||| ||| | ||||| || |||||||||||||||||| | || ||    
T  52248760 cagatccagatgctgaagtaatcgctttatcacccaaaactttactagcaacgaaccgtttcatatgcgagatctgcaacaaaggattccaacgggaaca 52248661  T
Q  259 gaatcttcagcttca 273  Q
    |||||| || |||||    
T  52248660 gaatctccaacttca 52248646  T

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