View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12125_low_21 (Length: 425)

Name: NF12125_low_21
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12125_low_21
NF12125_low_21
[»] chr8 (8 HSPs)
chr8 (12-406)||(42941055-42941478)
chr8 (12-406)||(37269689-37270112)
chr8 (162-271)||(36404063-36404172)
chr8 (32-163)||(8273671-8273802)
chr8 (177-270)||(9936388-9936481)
chr8 (194-256)||(8273845-8273907)
chr8 (76-142)||(30503128-30503194)
chr8 (82-146)||(37484897-37484961)
[»] scaffold0760 (2 HSPs)
scaffold0760 (155-406)||(1569-1837)
scaffold0760 (129-160)||(1844-1875)
[»] chr5 (3 HSPs)
chr5 (27-256)||(36988859-36989100)
chr5 (85-139)||(27408249-27408303)
chr5 (224-270)||(40296118-40296164)
[»] chr1 (3 HSPs)
chr1 (155-270)||(46594863-46594978)
chr1 (177-270)||(32774127-32774220)
chr1 (85-139)||(24722577-24722631)
[»] chr7 (4 HSPs)
chr7 (177-285)||(31234730-31234838)
chr7 (204-270)||(42460101-42460167)
chr7 (162-250)||(21245213-21245301)
chr7 (87-139)||(21245336-21245388)
[»] chr6 (6 HSPs)
chr6 (177-285)||(18246531-18246639)
chr6 (192-271)||(32548918-32548996)
chr6 (177-270)||(2920936-2921029)
chr6 (24-246)||(1034126-1034360)
chr6 (192-256)||(10232769-10232833)
chr6 (76-166)||(2921052-2921142)
[»] chr4 (10 HSPs)
chr4 (177-285)||(16989598-16989706)
chr4 (80-146)||(4913489-4913555)
chr4 (80-146)||(43441456-43441522)
chr4 (344-406)||(50481155-50481219)
chr4 (80-146)||(22904700-22904766)
chr4 (80-146)||(22956368-22956434)
chr4 (107-146)||(20672267-20672306)
chr4 (192-270)||(2282250-2282328)
chr4 (109-146)||(1466483-1466520)
chr4 (100-148)||(44645676-44645724)
[»] chr3 (5 HSPs)
chr3 (177-285)||(1259278-1259386)
chr3 (177-285)||(37242566-37242674)
chr3 (192-270)||(53553650-53553728)
chr3 (69-145)||(51042153-51042229)
chr3 (108-147)||(28517127-28517166)
[»] chr2 (6 HSPs)
chr2 (202-270)||(33858654-33858722)
chr2 (24-164)||(13016971-13017111)
chr2 (20-270)||(11272354-11272615)
chr2 (193-249)||(1479466-1479522)
chr2 (219-270)||(13016050-13016101)
chr2 (82-148)||(15316538-15316604)
[»] scaffold0495 (1 HSPs)
scaffold0495 (192-256)||(9492-9556)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 42941055 - 42941478
Alignment:
Q  12 aacctgtgtgtgcaatttgattgttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttggcatgcaacaatttggacaattt 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  42941055 aacctgtttgtgcaatttgattgttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttgacatgcaacaatttggacgattt 42941154  T
Q  112 ggaaggaaagaaatgcgaggatttttaagaatcaagcgaagga------------tgtggaggaaatcaaagttttatcttggttttgggtgttgagtag 199  Q
    ||||||||| |||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||| |||||||||||||    
T  42941155 ggaaggaaaaaaatgcgaggatttttaagaatcaagcgaaggatgtggatgagattgtggaggaaatcaaagttttatcttggtttggggtgttgagtag 42941254  T
Q  200 acttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaagccggctgtcttttttgggatctgctata 299  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  42941255 actaaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcgtaatagaagatgaagccggctgtctttttt-ggatctgctata 42941353  T
Q  300 ------tgtcatgt----------ctgttacggatggggtttttagcgcagcagttctgtttatagggaggggtttctgtgcttaggtgttttattggtt 383  Q
          ||||||||          |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  42941354 ggcatctgtcatgtctgttttcagctgttacgtatggggtttttagcgcagcagttctgtttttagggaggggtttctgtgcttagttgtttttttggtt 42941453  T
Q  384 ttgc--atgtttcatgccattgtac 406  Q
    ||||  |||||||||||||||||||    
T  42941454 ttgcatatgtttcatgccattgtac 42941478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 37270112 - 37269689
Alignment:
Q  12 aacctgtgtgtgcaatttgattgttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttggcatgcaacaatttggacaattt 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37270112 aacctgtttgtgcaatttgattgttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttggcatgcaacaatttggacgattt 37270013  T
Q  112 ggaaggaaagaaatgcgaggatttttaagaatcaagcgaaggatgtgga------------ggaaatcaaagttttatcttggttttgggtgttgagtag 199  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||            ||||||||||||| |||||||||||||||||||||||||    
T  37270012 ggaaggaa-gaaatgcgaggatttttaagaatcaagcgaaggatgtggatgagattgtggaggaaatcaaagttatatcttggttttgggtgttgagtag 37269914  T
Q  200 acttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaagccggctgtcttttttgggatctgctata 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37269913 acttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaagccggctgtctttttt-ggatctgctata 37269815  T
Q  300 ------tgtcatgt----------ctgttacggatggggtttttagcgcagcagttctgtttatagggaggggtttctgtgcttaggtgtttt-attggt 382  Q
          || |||||          |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  |||||    
T  37269814 ggcatctgccatgtctgttttcagctgttatggatggggttttttgcgcagcagttctgtttatcgggaggggtttctgtgcttaggtgttttctttggt 37269715  T
Q  383 tttgc--atgtttcatgccattgtac 406  Q
    |||||  ||||||||||||| |||||    
T  37269714 tttgcatatgtttcatgccaatgtac 37269689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 36404172 - 36404063
Alignment:
Q  162 gaaatcaaagttttatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaata 261  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||    
T  36404172 gaaatcaaagtggtatcttggttttgggcgttgagtagacttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatgtttaaata 36404073  T
Q  262 gaagatgaag 271  Q
    ||||||||||    
T  36404072 gaagatgaag 36404063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 8273671 - 8273802
Alignment:
Q  32 ttgttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttggcatgcaacaatttggacaatttggaaggaaagaaatgcgagg 131  Q
    ||||||||||||||||||    |||||||| || ||||| ||| ||||| ||||||||||||| ||||||||| | |||||||||||||||||||| |||    
T  8273671 ttgttggaatagtgaggttccctccaaaaggcttaaaaaggggttttggttgatttggcatgcgacaatttggtcgatttggaaggaaagaaatgcaagg 8273770  T
Q  132 atttttaagaatcaagcgaaggatgtggagga 163  Q
    |||||||| ||||||  ||| || ||||||||    
T  8273771 atttttaacaatcaaatgaaagaagtggagga 8273802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 9936388 - 9936481
Alignment:
Q  177 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 270  Q
    |||||| | ||| ||||||| ||||| |||||||| || |||||||||||||||||||||||||| |||||| | || || |||||||||||||    
T  9936388 tcttgggtgtggatgttgagcagactaaagatagcatcgttcctcttttatgagtggacttggaaccctagacagtgcctaaatagaagatgaa 9936481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 8273845 - 8273907
Alignment:
Q  194 gagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtct 256  Q
    ||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  8273845 gagtagattaaagatagcttctttcctcttttatgagtggatttggaatcctagagagtgtct 8273907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 30503194 - 30503128
Alignment:
Q  76 tttggatgatttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaagaa 142  Q
    ||||| ||||||| |||||||| |||||||  |||||||||||||| ||||||||||| ||||||||    
T  30503194 tttggttgatttgacatgcaactatttggatgatttggaaggaaaggaatgcgaggatctttaagaa 30503128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 37484961 - 37484897
Alignment:
Q  82 tgatttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaagaatcaa 146  Q
    ||||||||||||   | |||||| |||||||||||||||| ||||| ||||||||||| ||||||    
T  37484961 tgatttggcatgtggcgatttggtcaatttggaaggaaaggaatgctaggatttttaataatcaa 37484897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 155 - 406
Target Start/End: Complemental strand, 1837 - 1569
Alignment:
Q  155 tgtggaggaaatcaaagttttatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgt 254  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1837 tgtggaggaaatcaaagttatatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgt 1738  T
Q  255 cttaatagaagatgaagccggctgtcttttttgggatctgctata------tgtcatgt----------ctgttacggatggggtttttagcgcagcagt 338  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||      ||||||||          |||||| |||||| |||||| ||||||||||    
T  1737 cttaatagaagatgaagccgactgtctttttt-ggatctgctataggcatctgtcatgtctgttttcagctgttatggatggagttttttgcgcagcagt 1639  T
Q  339 tctgtttatagggaggggtttctgtgcttaggtgttttattggttttgc--atgtttcatgccattgtac 406  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||  ||||||||||||| |||||    
T  1638 tctgtttatagggaggggtttccgtgcttaggtgtttttttggttttgcatatgtttcatgccaatgtac 1569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 160
Target Start/End: Complemental strand, 1875 - 1844
Alignment:
Q  129 aggatttttaagaatcaagcgaaggatgtgga 160  Q
    ||||||||||||||||||||||||||||||||    
T  1875 aggatttttaagaatcaagcgaaggatgtgga 1844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 256
Target Start/End: Original strand, 36988859 - 36989100
Alignment:
Q  27 tttgattgttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttggcatgcaacaatttggacaatttggaaggaaagaaatg 126  Q
    |||||||||||||||||||| ||||   | || || || || |||||| ||||| ||||||||||||| || ||||||   |||||||||||||||||||    
T  36988859 tttgattgttggaatagtgaagtgatgccgaagaggcttaataaagggttttggttgatttggcatgctactatttggttgatttggaaggaaagaaatg 36988958  T
Q  127 cgaggatttttaagaatcaagcgaaggatgtggag------------gaaatcaaagttttatcttggttttgggtgttgagtagacttaagatagcttc 214  Q
    ||||||||||||| |||| |  |||| ||||||||            ||||||||||   | |||||| ||||| ||||||||||  | |||||||||||    
T  36988959 cgaggatttttaataatctaaggaagaatgtggaggaaatagtgaacgaaatcaaagcggtttcttgggtttggttgttgagtaggttgaagatagcttc 36989058  T
Q  215 cttcctcttttatgagtggacttggaatcctagagaatgtct 256  Q
     |||||||| ||| ||||||| |||||||||||||| |||||    
T  36989059 tttcctcttctataagtggacgtggaatcctagagagtgtct 36989100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 27408303 - 27408249
Alignment:
Q  85 tttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaa 139  Q
    |||||||||| || |||||||  |||||||||||||||||| |||||||||||||    
T  27408303 tttggcatgccactatttggatgatttggaaggaaagaaattcgaggatttttaa 27408249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 40296164 - 40296118
Alignment:
Q  224 ttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 270  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  40296164 ttatgagtggacttggaatcctaaagagtgtctaaatagaagatgaa 40296118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 46594978 - 46594863
Alignment:
Q  155 tgtggaggaaatcaaagttttatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgt 254  Q
    |||||| ||||| |||||  | |||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  46594978 tgtggatgaaattaaagtggtgtcttggttttgggtattgagtagacttaacatagcttcctttctcttttacgagtggacttgaaatcctaaagaatgt 46594879  T
Q  255 cttaatagaagatgaa 270  Q
     | ||||| |||||||    
T  46594878 ttaaataggagatgaa 46594863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 32774220 - 32774127
Alignment:
Q  177 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 270  Q
    |||||| |||||  |||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||| || || |||||||||||||    
T  32774220 tcttgggtttggacgttgagtagattaaagatagcctcattcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaa 32774127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 24722577 - 24722631
Alignment:
Q  85 tttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaa 139  Q
    |||||||||| || |||||||  |||||||||||||||||| |||||||||||||    
T  24722577 tttggcatgccactatttggatgatttggaaggaaagaaattcgaggatttttaa 24722631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 31234838 - 31234730
Alignment:
Q  177 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaagccggc 276  Q
    |||||| ||||| ||||||||||  | ||||||||||| |||||||| ||||||||||||||||||||  |||||||||| || ||||||||||  || |    
T  31234838 tcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacttggaatccacgagaatgtctaaacagaagatgaacacgac 31234739  T
Q  277 tgtcttttt 285  Q
    |||||||||    
T  31234738 tgtcttttt 31234730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 42460167 - 42460101
Alignment:
Q  204 aagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 270  Q
    |||||||| || |||||||||||||||| |||||||||||||||||| || || |||||||||||||    
T  42460167 aagatagcatcgttcctcttttatgagtagacttggaatcctagagagtgcctaaatagaagatgaa 42460101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 21245301 - 21245213
Alignment:
Q  162 gaaatcaaagttttatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagaga 250  Q
    ||||| ||||| || |||||||||||||| |||||||| || ||||| ||||| |  || || ||||||||| | ||||||||||||||    
T  21245301 gaaataaaagtgttgtcttggttttgggttttgagtaggctcaagattgcttcttgtctattctatgagtggtcgtggaatcctagaga 21245213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 21245388 - 21245336
Alignment:
Q  87 tggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaa 139  Q
    |||||||| |||||||||   ||||||||||| |||||||||| |||||||||    
T  21245388 tggcatgccacaatttggttgatttggaaggagagaaatgcgaagatttttaa 21245336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 18246639 - 18246531
Alignment:
Q  177 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaagccggc 276  Q
    |||||| ||||| ||||||||||  | ||||||||||| |||||||| ||||||||||| ||||||||  |||||||||| || ||||||||||  ||||    
T  18246639 tcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacgcggc 18246540  T
Q  277 tgtcttttt 285  Q
    |||||||||    
T  18246539 tgtcttttt 18246531  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 32548918 - 32548996
Alignment:
Q  192 ttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaag 271  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||| ||||||| ||||||||||||||    
T  32548918 ttgagtagacttaagatagcttctttc-tcttttataagtggacttagaatcctagataatgtctaaatagaagatgaag 32548996  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 2921029 - 2920936
Alignment:
Q  177 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 270  Q
    |||||| ||||| ||||||||||  | ||||||||||| |||||||||||||||||||| ||||||||  |||||||||| || ||||||||||    
T  2921029 tcttgggtttggatgttgagtaggttaaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaa 2920936  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 1034126 - 1034360
Alignment:
Q  24 caatttgattgttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttggcatgcaacaatttggacaatttggaaggaaagaa 123  Q
    |||||||| ||||||| || |||||||  ||| || ||||  || |||||  ||||| |||||||||| || |||||||||   ||||||||||||||||    
T  1034126 caatttgaatgttggagtaatgaggtggtttctaagagacataagaaaggtttttggttgatttggcacgcgacaatttggttgatttggaaggaaagaa 1034225  T
Q  124 atgcgaggatttttaagaatcaagcgaagga------------tgtggaggaaatcaaagttttatcttggttttgggtgttgagtagacttaagatagc 211  Q
    |||| ||||||||||| ||  ||||||||||             ||||| || || ||||   | |||||| |||||  |||||||||| | ||||||||    
T  1034226 atgcaaggatttttaataacaaagcgaaggaggttggtgagatagtggatgagattaaagcggtttcttgggtttggacgttgagtagattaaagatagc 1034325  T
Q  212 ttccttcctcttttatgagtggacttggaatccta 246  Q
     || |||||||||||||||||||||||||||||||    
T  1034326 atcgttcctcttttatgagtggacttggaatccta 1034360  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 10232769 - 10232833
Alignment:
Q  192 ttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtct 256  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||||| || ||| |||||    
T  10232769 ttgagtagactgaagatagcttctttcctcttttatgagtggatttggaatcttaaagagtgtct 10232833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 2921142 - 2921052
Alignment:
Q  76 tttggatgatttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaagaatcaagcgaaggatgtggaggaaat 166  Q
    ||||| ||||||||||  | || |||||| | ||||||||||||||||| || ||||| || || || |||  ||||||||||||||||||    
T  2921142 tttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaat 2921052  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 16989598 - 16989706
Alignment:
Q  177 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaagccggc 276  Q
    |||||| ||||| ||||||||||  | ||||||||||| |||||||| ||||||||||| ||||||||  |||||||||| || ||||||||||  ||||    
T  16989598 tcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccatgagaatgtctaaacagaagatgaacgcggc 16989697  T
Q  277 tgtcttttt 285  Q
    |||||||||    
T  16989698 tgtcttttt 16989706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 4913555 - 4913489
Alignment:
Q  80 gatgatttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaagaatcaa 146  Q
    |||||||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  4913555 gatgatttggcatgcctcaatttggatgatttggaaggaaagaaatgcgaggatttttaagaatcaa 4913489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 43441522 - 43441456
Alignment:
Q  80 gatgatttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaagaatcaa 146  Q
    |||||||||||||||  |||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  43441522 gatgatttggcatgcctcaatttggatgatttggaaggaaagaaacgcgaggatttttaagaatcaa 43441456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 50481155 - 50481219
Alignment:
Q  344 ttatagggaggggtttctgtgcttaggtgttttattggttttgc--atgtttcatgccattgtac 406  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||  ||||||||||||| |||||    
T  50481155 ttataaggaggagtttctgtgcttaggtgtttttttggttttgcatatgtttcatgccaatgtac 50481219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 22904766 - 22904700
Alignment:
Q  80 gatgatttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaagaatcaa 146  Q
    ||||||||| |||||  | |||||||  ||||||| ||||||||| |||||||||||||||||||||    
T  22904766 gatgatttgacatgcctctatttggatgatttggatggaaagaaacgcgaggatttttaagaatcaa 22904700  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 22956434 - 22956368
Alignment:
Q  80 gatgatttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaagaatcaa 146  Q
    ||||||||| |||||  | |||||||  ||||||| ||||||||| |||||||||||||||||||||    
T  22956434 gatgatttgacatgcctctatttggatgatttggatggaaagaaacgcgaggatttttaagaatcaa 22956368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 20672267 - 20672306
Alignment:
Q  107 aatttggaaggaaagaaatgcgaggatttttaagaatcaa 146  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  20672267 aatttggagggaaagaaacgcgaggatttttaagaatcaa 20672306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 2282250 - 2282328
Alignment:
Q  192 ttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 270  Q
    ||||||||| | |||| ||| || |||||||| ||||| ||||||| ||| ||||| ||||| || |||||||||||||    
T  2282250 ttgagtagattaaagaaagcatcgttcctcttctatgaatggacttagaaccctagggaatgcctaaatagaagatgaa 2282328  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 1466520 - 1466483
Alignment:
Q  109 tttggaaggaaagaaatgcgaggatttttaagaatcaa 146  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  1466520 tttggaaggaaagaaacgcgaggatttttaaggatcaa 1466483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 44645676 - 44645724
Alignment:
Q  100 tttggacaatttggaaggaaagaaatgcgaggatttttaagaatcaagc 148  Q
    ||||| |||||||||| ||||| ||||| ||||||||||| ||||||||    
T  44645676 tttggtcaatttggaaagaaaggaatgctaggatttttaaaaatcaagc 44645724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 1259386 - 1259278
Alignment:
Q  177 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaagccggc 276  Q
    |||||| ||||| ||||||||||  | ||||||||||| |||||||| ||||||||||| ||||||||  |||||||||| || ||||||||||  ||||    
T  1259386 tcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggc 1259287  T
Q  277 tgtcttttt 285  Q
    |||||||||    
T  1259286 tgtcttttt 1259278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 37242674 - 37242566
Alignment:
Q  177 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaagccggc 276  Q
    |||||| ||||| ||||||||||  | ||||||||||| |||||||| ||||||||||| ||||||||  |||||||||| || ||||||||||  ||||    
T  37242674 tcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggc 37242575  T
Q  277 tgtcttttt 285  Q
    |||||||||    
T  37242574 tgtcttttt 37242566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 53553728 - 53553650
Alignment:
Q  192 ttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 270  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||| |||||||    
T  53553728 ttgagtagattaaagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaa 53553650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 51042153 - 51042229
Alignment:
Q  69 aaaggggtttggatgatttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaagaatca 145  Q
    |||||| | ||| |||||||||| ||| |||||||||  |||||||||||||||||||| ||||| ||||| |||||    
T  51042153 aaagggttgtggttgatttggcacgcatcaatttggatgatttggaaggaaagaaatgcaaggatctttaataatca 51042229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 28517166 - 28517127
Alignment:
Q  108 atttggaaggaaagaaatgcgaggatttttaagaatcaag 147  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  28517166 atttggaaggaaaggaatgcggggatttttaagaatcaag 28517127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 33858722 - 33858654
Alignment:
Q  202 ttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 270  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  33858722 ttaagaaagcttccttcctcttatatgagtggacttggaatcctcgagaatgtctaaatagaagatgaa 33858654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 13017111 - 13016971
Alignment:
Q  24 caatttgattgttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttggcatgcaacaatttggacaatttggaaggaaagaa 123  Q
    |||||||| |||||||||||||| |||   || ||||| |  || |||||  ||||| ||||||||||||| ||||||||| | ||||||| ||||||||    
T  13017111 caatttgaatgttggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcgacaatttggtcgatttggatggaaagaa 13017012  T
Q  124 atgcgaggatttttaagaatcaagcgaaggatgtggaggaa 164  Q
    |||| ||||||||||||||  ||| |||||| || ||||||    
T  13017011 atgctaggatttttaagaacaaagtgaaggaagtagaggaa 13016971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 11272354 - 11272615
Alignment:
Q  20 tgtgcaatttgattgttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttggcatgcaacaatttggacaatttggaaggaa 119  Q
    |||||||||||| |||||||||| ||| || |  || || | ||| || || ||| ||||| |||||||||||||||||||||||   |||| ||| |||    
T  11272354 tgtgcaatttgaatgttggaataatgaagttaaatctaagatacttaagaaggggttttggttgatttggcatgcaacaatttggttgattt-gaaagaa 11272452  T
Q  120 agaaatgcgaggatttttaagaatcaagcgaaggatgtggag------------gaaatcaaagttttatcttggttttgggtgttgagtagacttaaga 207  Q
    |||||||| |||||||| || ||||||   ||||| ||||||            ||||||||||   | |||||| |||||  |||||||||  | ||||    
T  11272453 agaaatgcaaggattttcaataatcaaagaaaggaagtggaggaaattgtgaatgaaatcaaagcggtttcttgggtttggacgttgagtaggttaaaga 11272552  T
Q  208 tagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 270  Q
    ||||||| |||||||| |||||||| ||||||| ||||||||| || |  |||||||||||||    
T  11272553 tagcttctttcctcttctatgagtgaacttggattcctagagagtgcccaaatagaagatgaa 11272615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 1479522 - 1479466
Alignment:
Q  193 tgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagag 249  Q
    |||||||| | |||||||| || ||||||||||||||||||||||||||||||||||    
T  1479522 tgagtagattaaagatagcatcgttcctcttttatgagtggacttggaatcctagag 1479466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 13016101 - 13016050
Alignment:
Q  219 ctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 270  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  13016101 ctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaa 13016050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 15316538 - 15316604
Alignment:
Q  82 tgatttggcatgcaacaatttggacaatttggaaggaaagaaatgcgaggatttttaagaatcaagc 148  Q
    |||||||||| ||  |||||||||  ||||||| |||||| ||||||||||||||||  ||||||||    
T  15316538 tgatttggcacgcggcaatttggatgatttggagggaaaggaatgcgaggatttttacaaatcaagc 15316604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 9492 - 9556
Alignment:
Q  192 ttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtct 256  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||||| || ||| |||||    
T  9492 ttgagtagactgaagatagcttctttcctcttttatgagtggatttggaatcttaaagagtgtct 9556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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