View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12125_low_22 (Length: 423)
Name: NF12125_low_22
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 2687658 - 2687264
Alignment:
| Q |
17 |
aaaagtgactgattaaaattaagaagatgaagagagttgatgacaattgaactagtttgagttaagagataaagagttggaagtcatgatttaaatttaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2687658 |
aaaagtgactgattaaaattaagaagatgaagagagttgatgacaattaaactagtttgagttaagagataaagagttggaagtcatgatttaaatttaa |
2687559 |
T |
|
| Q |
117 |
acnnnnnnnnnnnnttaatctaacaactaactactatatagacaaaatgacaatagtcattgaaaattcacatacacaaataaaaaagttgtagtttaaa |
216 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2687558 |
acaaaaaagaaaaattaatctaacaactaactactatatagacaaaatgataatagtcattgaaaattcacatacacaaataaaaaagttgtagtttaaa |
2687459 |
T |
|
| Q |
217 |
tttcaatcaacttaacatttttgtcaattaagataggacttatgcacatatcaagattttataatcgatggtacacatagggcttgaaagttgaaagatt |
316 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2687458 |
tttcaatcaatttaacatttttgtcaattaagataggacttatacacatatcaagattttataatcgatggtacacatagggcttgaaagttgaaagatt |
2687359 |
T |
|
| Q |
317 |
ccaaaaattattaataaacaaacacatataaagctatctccgattctccatcttaaaacgaattcagctcagtagcaacactctctaaacacagg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2687358 |
ccaaaaattattaataaacaaacacatataaagctatctccgattctccatcttaaaacgaattcagctcagtagcaacactctctaaacacagg |
2687264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 37146321 - 37146268
Alignment:
| Q |
154 |
atagacaaaatgacaatagtcattgaaaattcacatacacaaataaaaaagttg |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| || | ||||||||| |
|
|
| T |
37146321 |
atagacaaaatgacaatagtaattgaaaattcacttacataagtgaaaaagttg |
37146268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 10828513 - 10828541
Alignment:
| Q |
154 |
atagacaaaatgacaatagtcattgaaaa |
182 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10828513 |
atagacaaaatgacaatagtcattgaaaa |
10828541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University