View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12125_low_28 (Length: 353)

Name: NF12125_low_28
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12125_low_28
NF12125_low_28
[»] chr2 (3 HSPs)
chr2 (69-308)||(8258558-8258800)
chr2 (28-68)||(8258496-8258536)
chr2 (204-290)||(13266789-13266875)
[»] chr7 (2 HSPs)
chr7 (186-290)||(32471261-32471366)
chr7 (18-66)||(29292189-29292237)
[»] chr8 (1 HSPs)
chr8 (18-68)||(11364481-11364531)
[»] chr6 (2 HSPs)
chr6 (187-286)||(6919337-6919437)
chr6 (18-62)||(13436842-13436886)
[»] chr5 (1 HSPs)
chr5 (18-62)||(42954804-42954848)
[»] chr4 (1 HSPs)
chr4 (18-62)||(23407672-23407716)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 69 - 308
Target Start/End: Original strand, 8258558 - 8258800
Alignment:
Q  69 attagagttgcatattgaagaatttttt-aacgagattgcattactatgtctttagaacctccattgtcacaaaagacgagaaatatatcgaaaagttgg 167  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8258558 attagagttgcatattgaagaatttttttaacgaaattgcatgactatgtctttagaacctccattgtcacaaaagacgagaaatatattgaaaagttgg 8258657  T
Q  168 aaatatatgtgacgattcaata--gtatatgagaaaatacacttgacataatattattgatgagacaaatgaagatgttgctagtaatcctaaaatcaag 265  Q
    |||||||||  | |||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  8258658 aaatatatgacatgattcaatatagtatatgatgaaatacacttgacataatattattgatgagacaaatgaagacgttgctagtaatcctaaaatcaat 8258757  T
Q  266 aaagcttgaattgtgcataaatagataaactatgatgggtatg 308  Q
     ||||||||||| || |||||||||||||||||||||||||||    
T  8258758 gaagcttgaattatggataaatagataaactatgatgggtatg 8258800  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 8258496 - 8258536
Alignment:
Q  28 ttcatttaataatcaattcacaatcatcaatttatcacatt 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8258496 ttcatttaataatcaattcacaatcatcaatttatcacatt 8258536  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 13266789 - 13266875
Alignment:
Q  204 acacttgacataatattattgatgagacaaatgaagatgttgctagtaatcctaaaatcaagaaagcttgaattgtgcataaataga 290  Q
    ||||||||| |||| |||| |  |||| ||||| | |||| |||||||||  |||||| ||| ||||||| ||||||||||||||||    
T  13266789 acacttgacgtaattttatagtcgagataaatggacatgtggctagtaattttaaaattaaggaagcttggattgtgcataaataga 13266875  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 32471366 - 32471261
Alignment:
Q  186 aatagtatatgagaaaatacacttgacataatattattgat-gagacaaatgaagatgttgctagtaatcctaaaatcaagaaagcttgaattgtgcata 284  Q
    ||||| ||||||| |||||| |||| ||||||||||||| | ||| |||||| | |||| | |||| |||||||||||||| ||||||| ||||||||||    
T  32471366 aatagaatatgaggaaatacgcttggcataatattattggttgaggcaaatggacatgtagttagtgatcctaaaatcaaggaagcttggattgtgcata 32471267  T
Q  285 aataga 290  Q
    ||||||    
T  32471266 aataga 32471261  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 29292237 - 29292189
Alignment:
Q  18 aattttacctttcatttaataatcaattcacaatcatcaatttatcaca 66  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  29292237 aattttacctttcacttaataatcaattcacaattatcaatttatcaca 29292189  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 11364531 - 11364481
Alignment:
Q  18 aattttacctttcatttaataatcaattcacaatcatcaatttatcacatt 68  Q
    |||||||||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  11364531 aattttacctttgatttaataaacaatttacaattatcaatttatcacatt 11364481  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 286
Target Start/End: Original strand, 6919337 - 6919437
Alignment:
Q  187 atagtatatgagaaaatacacttgacataatattattgat-gagacaaatgaagatgttgctagtaatcctaaaatcaagaaagcttgaattgtgcataa 285  Q
    |||| ||||| ||||||||||||| ||||| || |||| | ||| |||||| | |||| |||||| || ||||||| ||||||| ||| |||||||||||    
T  6919337 atagcatatgggaaaatacacttggcataacataattggttgaggcaaatggacatgtggctagtgatactaaaattaagaaagtttggattgtgcataa 6919436  T
Q  286 a 286  Q
    |    
T  6919437 a 6919437  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 13436842 - 13436886
Alignment:
Q  18 aattttacctttcatttaataatcaattcacaatcatcaatttat 62  Q
    ||||||||||||||||| | |||||||||||||| |||| |||||    
T  13436842 aattttacctttcatttcacaatcaattcacaattatcattttat 13436886  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 42954848 - 42954804
Alignment:
Q  18 aattttacctttcatttaataatcaattcacaatcatcaatttat 62  Q
    ||||||||||||||||| | |||||||||||||| |||| |||||    
T  42954848 aattttacctttcatttcacaatcaattcacaattatcattttat 42954804  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 23407672 - 23407716
Alignment:
Q  18 aattttacctttcatttaataatcaattcacaatcatcaatttat 62  Q
    ||||||||||||||||| | |||||||||||||| |||| |||||    
T  23407672 aattttacctttcatttcacaatcaattcacaattatcattttat 23407716  T

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