View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12125_low_29 (Length: 352)
Name: NF12125_low_29
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 3337979 - 3337655
Alignment:
| Q |
12 |
acctgtgattaataaataacttgtttatcatgttatccctattatatattgaatttctcttcaagtttgttgagccctagtttgccattcaaagaatatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3337979 |
acctgtgattaataaataacttgtttatcatgttatccctattatatattgaatttctcttcaagtttgttgagccctagtttgccattcaaagaatatt |
3337880 |
T |
|
| Q |
112 |
gaataatttagcacgcatgaaaagtaccgcatataaaacaaatgttattatagttataaaatcgacctgtaaaataagaggttaattacttttgtaaact |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3337879 |
gaataatttagcacgcatgaaaagtaccgcatataaaacaaatgttattatagttataaaatcgacctgtaaaataagaggttaattacttttgtaaact |
3337780 |
T |
|
| Q |
212 |
catctaaaacactattcatccttaaaaaattgacttgaaagattagagttgtcattgttgatataaactcatctaaaatataatttttattctccgtgag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3337779 |
catctaaaacactattcatccttaaaaaattgacttgaaagataagagttgtcattgttgatataaactcatctaaaatataatttttattctatgtgag |
3337680 |
T |
|
| Q |
312 |
atttgagttttaccaaccaatactt |
336 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
3337679 |
atttgagttttaccaactaatactt |
3337655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University