View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_3 (Length: 727)
Name: NF12125_low_3
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 701; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 19 - 727
Target Start/End: Original strand, 2489539 - 2490247
Alignment:
| Q |
19 |
aacattctccgacattggtgccttagacgagactaaagattcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggcctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489539 |
aacattctccgacattggtgccttagacgagactaaagattcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggcctt |
2489638 |
T |
|
| Q |
119 |
ctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489639 |
ctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcatta |
2489738 |
T |
|
| Q |
219 |
atgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489739 |
atgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattat |
2489838 |
T |
|
| Q |
319 |
atttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489839 |
atttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggat |
2489938 |
T |
|
| Q |
419 |
ggacttacctcgaaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggt |
518 |
Q |
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| T |
2489939 |
ggacttacctcgaaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggt |
2490038 |
T |
|
| Q |
519 |
acctctactagttctacatgtacaatgaattttttgtgctctttcttagtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatc |
618 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490039 |
acctctactagttcgacatgtacaatgaattttttgtgctctttcttagtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatc |
2490138 |
T |
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| Q |
619 |
tttgctattagttcaaattcatgtggacctgttttcaaaacccgttagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgt |
718 |
Q |
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| T |
2490139 |
tttgctattagttcaaattcatgtggacctgttttcaaaacccattagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgt |
2490238 |
T |
|
| Q |
719 |
actgttagc |
727 |
Q |
| |
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||||||||| |
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| T |
2490239 |
actgttagc |
2490247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 20 - 518
Target Start/End: Complemental strand, 41591446 - 41590948
Alignment:
| Q |
20 |
acattctccgacattggtgccttagacgagactaaagattcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttc |
119 |
Q |
| |
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|||||||| || |||||||||||||| || || ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |
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| T |
41591446 |
acattctctgatattggtgccttagaagaaacaaaagaatcacttcaagaactagtaatgcttcctcttcgaaggccagaccttttcactggaggacttc |
41591347 |
T |
|
| Q |
120 |
taaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaa |
219 |
Q |
| |
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|||| || ||| | |||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| || |||||||||||||||||||| |
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| T |
41591346 |
taaaaccatgtcggggaatattgctatttgggcctcctggaactgggaaaacaatgctggcgaaggccattgcaaaggaagctggagcaagtttcattaa |
41591247 |
T |
|
| Q |
220 |
tgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattata |
319 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
41591246 |
tgtgtccatgtctaccatcacttctaaatggtttggtgaagatgagaagaatgttcgcgctttattcacacttgcatccaaagtctccccaactattata |
41591147 |
T |
|
| Q |
320 |
tttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatg |
419 |
Q |
| |
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||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| | |
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| T |
41591146 |
tttgtcgatgaggttgatagcatgcttgggcaacgaacaagagttggggagcatgaagccatgcggaaaataaagaatgaatttatgtcccattgggacg |
41591047 |
T |
|
| Q |
420 |
gacttacctcgaaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggt |
518 |
Q |
| |
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| T |
41591046 |
ggctcacgacaaaacaaggagagcgcatccttgttcttgcagcaaccaataggccatttgacttggatgaagctattataaggcgatttgaaaggaggt |
41590948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 35 - 423
Target Start/End: Complemental strand, 11094830 - 11094442
Alignment:
| Q |
35 |
ggtgccttagacgagactaaagattcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagag |
134 |
Q |
| |
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||||| ||||| |||| ||||| || |||||||| |||||||||||||||||| |||| ||||||||||| |||| || ||||||||||| ||||||| |
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| T |
11094830 |
ggtgcattagatgagataaaagaatcgcttcaagagctagtaatgcttccccttagaagaccagaccttttcaaaggtggacttctaaagccatgtagag |
11094731 |
T |
|
| Q |
135 |
gaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctac |
234 |
Q |
| |
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| ||||| || || || |||||||| || |||||||||||||| |||||||| ||||| || || || ||||||||||||||||| || || ||||| || |
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| T |
11094730 |
gtatattacttttcggtccacctggtaccggaaaaacaatgctagcaaaggcgattgcgaatgaagcaggagcaagtttcattaacgtctcgatgtccac |
11094631 |
T |
|
| Q |
235 |
catcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggtt |
334 |
Q |
| |
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|||||||| |||||||| || ||||| || ||||||||||||||||| ||||| || ||||| ||||| | || ||||||||||| |||||||| ||| |
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| T |
11094630 |
gatcacttcaaaatggttcggagaagatgaaaagaatgtccgagctttgttcacgctagcagctaaggttgctccgactattatattcgtcgatgaagtt |
11094531 |
T |
|
| Q |
335 |
gacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggact |
423 |
Q |
| |
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| T |
11094530 |
gacagcatgctcggtcagcgtactagagtcggagaacatgaggccatgaggaagattaaaaatgaattcatgacacattgggatggact |
11094442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 39697136 - 39697027
Alignment:
| Q |
134 |
ggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtcta |
233 |
Q |
| |
|
||||||||||| ||||| || ||||| || |||||||||||||| |||||||| | |||| ||| |||||||||| ||||||||| | |||||||||| |
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| T |
39697136 |
ggaatattgctttttggcccccctggcacgggaaaaacaatgcttgcaaaggcggtagcaaccgaagctggagcaaatttcattaacatctccatgtcta |
39697037 |
T |
|
| Q |
234 |
ccatcacttc |
243 |
Q |
| |
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||| ||||| |
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|
| T |
39697036 |
gcattacttc |
39697027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 44926625 - 44926730
Alignment:
| Q |
117 |
ttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcat |
216 |
Q |
| |
|
|||| ||||| |||| ||| |||| || ||||| || ||||| |||||||| |||||||| |||||||| |||||||| || ||||||||||||||||| |
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|
| T |
44926625 |
ttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcat |
44926724 |
T |
|
| Q |
217 |
taatgt |
222 |
Q |
| |
|
||||| |
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|
| T |
44926725 |
caatgt |
44926730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 44935065 - 44935170
Alignment:
| Q |
117 |
ttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcat |
216 |
Q |
| |
|
|||| ||||| |||| ||| ||||||| ||||| || ||||| |||||||| |||||||| || ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
44935065 |
ttctgaagccatgtaaaggtgtattgctttttggacctcctggtacaggaaagacaatgcttgccaaggcaattgcaaatgaagctggagcaagtttcat |
44935164 |
T |
|
| Q |
217 |
taatgt |
222 |
Q |
| |
|
||||| |
|
|
| T |
44935165 |
caatgt |
44935170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 45988450 - 45988556
Alignment:
| Q |
116 |
cttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttca |
215 |
Q |
| |
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||||| ||||| |||| ||| ||||||| ||||| || ||||| |||||||| |||||||| |||||||| ||||| || || ||||||||||||||| |
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| T |
45988450 |
cttctgaagccatgtaaaggtgtattgctttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgctaatgaatctggagcaagtttca |
45988549 |
T |
|
| Q |
216 |
ttaatgt |
222 |
Q |
| |
|
| ||||| |
|
|
| T |
45988550 |
tcaatgt |
45988556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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