View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12125_low_30 (Length: 351)

Name: NF12125_low_30
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12125_low_30
NF12125_low_30
[»] chr8 (7 HSPs)
chr8 (7-340)||(35619706-35620039)
chr8 (55-240)||(29218594-29218780)
chr8 (74-159)||(44287714-44287799)
chr8 (83-183)||(19873560-19873660)
chr8 (92-183)||(12147723-12147814)
chr8 (15-192)||(15760588-15760766)
chr8 (77-193)||(25242279-25242395)
[»] chr4 (9 HSPs)
chr4 (64-180)||(17131869-17131985)
chr4 (65-180)||(19799316-19799431)
chr4 (74-186)||(16988851-16988963)
chr4 (238-330)||(10654865-10654957)
chr4 (238-333)||(5241465-5241560)
chr4 (53-126)||(5382041-5382114)
chr4 (86-123)||(14041153-14041190)
chr4 (238-330)||(10869010-10869102)
chr4 (74-194)||(22645620-22645740)
[»] chr2 (4 HSPs)
chr2 (65-220)||(13132826-13132981)
chr2 (64-185)||(34977761-34977882)
chr2 (78-186)||(21806995-21807103)
chr2 (77-186)||(20970613-20970722)
[»] chr6 (4 HSPs)
chr6 (77-193)||(34069036-34069152)
chr6 (238-333)||(14816923-14817018)
chr6 (85-147)||(28294432-28294494)
chr6 (85-147)||(28517579-28517641)
[»] chr7 (3 HSPs)
chr7 (77-186)||(8854501-8854610)
chr7 (64-193)||(10293091-10293220)
chr7 (83-147)||(18479550-18479614)
[»] chr3 (5 HSPs)
chr3 (65-193)||(8838293-8838421)
chr3 (65-220)||(55312202-55312357)
chr3 (77-186)||(4642826-4642935)
chr3 (101-159)||(17698432-17698490)
chr3 (83-147)||(17477431-17477495)
[»] chr5 (4 HSPs)
chr5 (77-186)||(26464698-26464807)
chr5 (98-180)||(15450965-15451047)
chr5 (85-183)||(20238075-20238173)
chr5 (111-220)||(26492341-26492450)
[»] chr1 (2 HSPs)
chr1 (212-333)||(2361682-2361803)
chr1 (125-193)||(18008321-18008389)


Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 340
Target Start/End: Complemental strand, 35620039 - 35619706
Alignment:
Q  7 gaagcagagatttggtgaaaaaatcagctacttgattttagaggaaacatggagtaacttgaagaggccagcttgcagtttttccctaacaatgtgacaa 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  35620039 gaagcaaagatttggtgaaaaaatcagctacttgattttagaggaaacatggagtaacttgaagaggtcaacttgcagtttttccctaacaatgtgacaa 35619940  T
Q  107 tcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttatcacagtaaaggacaggagctttgacacatt 206  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35619939 tcaatttcaaggtgcttagttctttcacggaacacgggatttgcagcaatgtgtatggcactttggttatcacagtaaaggacaggagctttgacacatt 35619840  T
Q  207 gtaattgtaaatctttgatgaaataaagcaaccattgtagcgcacaggtagcagaagccaagacacaatattcagcttcagatgaagatctagagaccgt 306  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35619839 gtacttgtaaacctttgatgaaataaagcaaccattgtagcgcacaggtagcagaagccaagacacaatattcagcttcagatgaagatctagagaccgt 35619740  T
Q  307 aacctacttctttgttctccaagagataagtgat 340  Q
    ||||| |||||||||||||||||| |||||||||    
T  35619739 aacctgcttctttgttctccaagaaataagtgat 35619706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 55 - 240
Target Start/End: Original strand, 29218594 - 29218780
Alignment:
Q  55 atggagtaacttgaagaggcca-gcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagc 153  Q
    |||||| ||||||||||| ||| || |||||||| || |||| |||||| ||| ||||||  |  || |||||||||||| | || |||| ||||| |||    
T  29218594 atggaggaacttgaagagaccatgcgtgcagtttctctctaataatgtggcaaccaattttcaaatgtttagttctttcatgaaatactgaatttgaagc 29218693  T
Q  154 aatgtgtatggcactttggttatcacagtaaaggacaggagctttgacacattgtaattgtaaatctttgatgaaataaagcaacca 240  Q
    || ||||||| ||||||||| |||| ||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||    
T  29218694 aaagtgtatgacactttggtcatcaaagtaaaggataggagttttgacacattgtacttgtaaatctttgatgagataaaacaacca 29218780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 44287714 - 44287799
Alignment:
Q  74 ccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtg 159  Q
    |||||||| | |||||||||||| || ||||| || ||||| ||||| || ||||||||| |||||||||| || |||||||||||    
T  44287714 ccagcttgaactttttccctaactatatgacagtctatttccaggtgttttgttctttcatggaacactgggttcgcagcaatgtg 44287799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 19873660 - 19873560
Alignment:
Q  83 agtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttatcacagt 182  Q
    |||||||| || |||||||| || |||||||| |  || |||||||||||| ||||||||||||| || |  ||||| |  ||||| |||||||||||||    
T  19873660 agtttttctctgacaatgtgccagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagt 19873561  T
Q  183 a 183  Q
    |    
T  19873560 a 19873560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 12147723 - 12147814
Alignment:
Q  92 ctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttatcacagta 183  Q
    ||||||| ||| ||||| ||||| | ||| || ||||||||| |||| ||||||||||  ||||| ||||  |||||||| |||||||||||    
T  12147723 ctaacaaagtggcaatctatttctaagtgttttgttctttcatggaaaactggatttgttgcaatatgtaatgcactttgattatcacagta 12147814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 15760766 - 15760588
Alignment:
Q  15 gatttggtgaaaaaatcagctacttgat-tttagaggaaacatggagtaacttgaagaggccagcttgcagtttttccctaacaatgtgacaatcaattt 113  Q
    ||||| ||||||||||| || ||||||| |||||| |||| | |||| |  ||||| |  |||||||||| ||| || || || || ||||| ||||| |    
T  15760766 gattttgtgaaaaaatctgccacttgatctttagaagaaatagggagaagtttgaacaaaccagcttgcaatttctctctgactatatgacagtcaatct 15760667  T
Q  114 caaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttatcacagtaaaggacagg 192  Q
    |||| || || || | |||| |||| || ||||| ||||||||||  || ||||| ||||||||||| ||||| |||||    
T  15760666 caagatgtttggtgcattcatggaagacaggattagcagcaatgtagatagcactctggttatcacaataaagaacagg 15760588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 25242279 - 25242395
Alignment:
Q  77 gcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttat 176  Q
    |||||||  ||||||||||| |  ||||| ||||| ||||| | ||   |||||||| | || |||| ||| || |||||||||| |||||| |||||||    
T  25242279 gcttgcaacttttccctaaccaaatgacagtcaatctcaagattctctattctttcatgaaaaactgcattagctgcaatgtgtaaggcactatggttat 25242378  T
Q  177 cacagtaaaggacagga 193  Q
    |||| ||||| ||||||    
T  25242379 cacaataaagaacagga 25242395  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 17131985 - 17131869
Alignment:
Q  64 cttgaagaggccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatg 163  Q
    |||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||| || ||||||||| |||||||| ||||||| |||||||| ||     
T  17131985 cttgaataggccagcttgaagtttttccctcacaatatgacagtcaatttcaaggtgtttggttctttcatggaacactagatttgctgcaatgtgcata 17131886  T
Q  164 gcactttggttatcaca 180  Q
    |||||||| ||||||||    
T  17131885 gcactttgattatcaca 17131869  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 19799316 - 19799431
Alignment:
Q  65 ttgaagaggccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatgg 164  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| || || ||| | ||| | | ||||||||  || ||||| || ||||    
T  19799316 ttgaagaggccagcttgtagtttttccctcacaatgtgacaatcaatctcaagatgtttggttttctcatgaaccactggatgggctgcaatatgcatgg 19799415  T
Q  165 cactttggttatcaca 180  Q
    ||||||| || |||||    
T  19799416 cactttgattgtcaca 19799431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 16988963 - 16988851
Alignment:
Q  74 ccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggt 173  Q
    |||||||||||||| || ||||| | |||||| |||||||||||||| || | ||||||| | ||||| |||||||| || || || |  |||||||| |    
T  16988963 ccagcttgcagtttctctctaactaagtgacagtcaatttcaaggtgttttgctctttcatgaaacacaggatttgctgctatatgcaaagcactttgat 16988864  T
Q  174 tatcacagtaaag 186  Q
    ||||||| |||||    
T  16988863 tatcacaataaag 16988851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 10654957 - 10654865
Alignment:
Q  238 ccattgtagcgcacaggtagcagaagccaagacacaatattcagcttcagatgaagatctagagaccgtaacctacttctttgttctccaaga 330  Q
    |||||||||  |||||||||| ||||||||  | | ||||||||||||||| ||||||||||| || || |  |  |||||||||||||||||    
T  10654957 ccattgtagttcacaggtagctgaagccaatgccctatattcagcttcagaggaagatctagaaactgtgatttgtttctttgttctccaaga 10654865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 5241560 - 5241465
Alignment:
Q  238 ccattgtagcgcacaggtagcagaagccaagacacaatattcagcttcagatgaagatctagagaccgtaacctacttctttgttctccaagagat 333  Q
    |||||||||  |||| ||||| ||||||||  | | ||||||||||||||| ||||||||||| || || |  |  ||||||||||||||||||||    
T  5241560 ccattgtagttcacaagtagctgaagccaatgccctatattcagcttcagaggaagatctagatactgtgatttgtttctttgttctccaagagat 5241465  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 5382041 - 5382114
Alignment:
Q  53 acatggagtaacttgaagaggccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagt 126  Q
    ||||| ||||||||||| || |||| |||||| || || || | |||||||||||||||||  |||||||||||    
T  5382041 acatgaagtaacttgaaaagaccagtttgcagcttctctctgaaaatgtgacaatcaattttcaggtgcttagt 5382114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 14041190 - 14041153
Alignment:
Q  86 ttttccctaacaatgtgacaatcaatttcaaggtgctt 123  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  14041190 ttttccctcacaatgtggcaatcaatttcaaggtgctt 14041153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 10869102 - 10869010
Alignment:
Q  238 ccattgtagcgcacaggtagcagaagccaagacacaatattcagcttcagatgaagatctagagaccgtaacctacttctttgttctccaaga 330  Q
    |||||||||  |||| ||||| ||||||||  | | ||||||||||||||| ||||||||||| || || |  |  |||||||||||||||||    
T  10869102 ccattgtagttcacaagtagctgaagccaatgccctatattcagcttcagaggaagatctagaaactgtgatttgtttctttgttctccaaga 10869010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 22645740 - 22645620
Alignment:
Q  74 ccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggt 173  Q
    |||||||||| |||||| |||||||| ||||| ||||| || |  || || ||||| ||| |||| || || || |||||||| || | |||||| ||||    
T  22645740 ccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcagcaatatgaagggcactctggt 22645641  T
Q  174 tatcacagtaaaggacaggag 194  Q
    ||||||| || || |||||||    
T  22645640 tatcacaatagagcacaggag 22645620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 220
Target Start/End: Complemental strand, 13132981 - 13132826
Alignment:
Q  65 ttgaagaggccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatgg 164  Q
    ||||||| ||| ||||| || |||||||| ||||||||||| ||||||||||| || |||||||||||| | || || |||||||  |||||||| || |    
T  13132981 ttgaagatgcctgcttgtagcttttcccttacaatgtgacagtcaatttcaagatgtttagttctttcatgaaaaacaggatttgatgcaatgtgcatag 13132882  T
Q  165 cactttggttatcacagtaaaggacaggagctttgacacattgtaattgtaaatct 220  Q
    ||||||| |||||||| ||||| ||||||  ||  |||||||| | ||||||||||    
T  13132881 cactttgattatcacaataaagcacaggaagttgaacacattgaacttgtaaatct 13132826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 34977761 - 34977882
Alignment:
Q  64 cttgaagaggccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatg 163  Q
    |||||||||||| ||||| ||||||||||| |||||||| || ||||| || || ||  | ||||| ||| |||| ||||| || || |||||||| ||     
T  34977761 cttgaagaggcccgcttgaagtttttccctcacaatgtggcagtcaatctctagatgtatggttctctcatggaagactgggttggctgcaatgtgcata 34977860  T
Q  164 gcactttggttatcacagtaaa 185  Q
    | ||||||||| ||||||||||    
T  34977861 gaactttggttgtcacagtaaa 34977882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 21806995 - 21807103
Alignment:
Q  78 cttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttatc 177  Q
    |||||||||| || ||||| | |||||| |||||||||||||| || ||||||||| | ||||| |||||||| || || || |  |||||||| |||||    
T  21806995 cttgcagtttctctctaactaagtgacagtcaatttcaaggtgttttgttctttcatgaaacacaggatttgctgctatatgcaaagcactttgattatc 21807094  T
Q  178 acagtaaag 186  Q
    ||| |||||    
T  21807095 acaataaag 21807103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 20970613 - 20970722
Alignment:
Q  77 gcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttat 176  Q
    ||||| ||||| || ||||| | ||||||||||||||| | ||| || ||||| ||| ||||||||||||| || |||||| | |  ||||| |||||||    
T  20970613 gcttgtagtttctctctaaccaagtgacaatcaatttctaagtgttttgttctctcatggaacactggattggctgcaatgcgcagagcactatggttat 20970712  T
Q  177 cacagtaaag 186  Q
    |||| |||||    
T  20970713 cacaataaag 20970722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 34069152 - 34069036
Alignment:
Q  77 gcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttat 176  Q
    ||||| |||||||| ||||| | |||||| ||||| ||||||||||| ||||||||| | || ||||| || || |||||||||| |||||| ||||| |    
T  34069152 gcttgtagtttttctctaaccaagtgacagtcaatctcaaggtgcttggttctttcatgaaagactgggttagctgcaatgtgtaaggcactctggttgt 34069053  T
Q  177 cacagtaaaggacagga 193  Q
    |||||||||| ||||||    
T  34069052 cacagtaaagcacagga 34069036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 14817018 - 14816923
Alignment:
Q  238 ccattgtagcgcacaggtagcagaagccaagacacaatattcagcttcagatgaagatctagagaccgtaacctacttctttgttctccaagagat 333  Q
    |||||||||  |||| ||||| ||||||||  | | ||||||||||||||| ||||||||||| || || |  |  ||||||||||||||||||||    
T  14817018 ccattgtagttcacaagtagctgaagccaatgccctatattcagcttcagaggaagatctagatactgtgatttgtttctttgttctccaagagat 14816923  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 28294494 - 28294432
Alignment:
Q  85 tttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatt 147  Q
    |||||| || ||||||||||| |||||||| |  || |||||||||||| |||||||||||||    
T  28294494 tttttctctgacaatgtgacagtcaatttccaaatgtttagttctttcatggaacactggatt 28294432  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 28517579 - 28517641
Alignment:
Q  85 tttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatt 147  Q
    |||||| || ||||||||||| |||||||| |  || |||||||||||| |||||||||||||    
T  28517579 tttttctctgacaatgtgacagtcaatttccaaatgtttagttctttcatggaacactggatt 28517641  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 8854610 - 8854501
Alignment:
Q  77 gcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttat 176  Q
    ||||| || ||||| ||||| | || ||||||||| ||||||||||| ||||||||| |||| ||| | || || ||||||||||  |||||||||||||    
T  8854610 gcttgtagcttttctctaaccaagtaacaatcaatctcaaggtgcttggttctttcatggaaaactaggttggctgcaatgtgtaaagcactttggttat 8854511  T
Q  177 cacagtaaag 186  Q
    ||||||||||    
T  8854510 cacagtaaag 8854501  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 10293220 - 10293091
Alignment:
Q  64 cttgaagaggccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatg 163  Q
    ||||||||||||  |||| | ||||||||| ||||| || || ||||||| ||| || || ||||| ||| |||| ||||| || || |||||||| ||     
T  10293220 cttgaagaggcctacttgtaatttttccctcacaatatgccagtcaattttaagatgtttggttctctcatggaagactggtttagctgcaatgtgcata 10293121  T
Q  164 gcactttggttatcacagtaaaggacagga 193  Q
    | |||||| ||||||||||| |||||||||    
T  10293120 gtactttgattatcacagtataggacagga 10293091  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 18479550 - 18479614
Alignment:
Q  83 agtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatt 147  Q
    |||||||| || |||||||| || |||||||| |  || |||||||||||| |||||||||||||    
T  18479550 agtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggatt 18479614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 8838421 - 8838293
Alignment:
Q  65 ttgaagaggccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatgg 164  Q
    ||||||| ||| ||||| || |||||||| ||||||||||||||||| ||||| || || ||||||||| | || || ||||| |  |||||||| || |    
T  8838421 ttgaagatgcctgcttgtagcttttccctcacaatgtgacaatcaatctcaagatgtttggttctttcatgaaaaacaggattggatgcaatgtgcatag 8838322  T
Q  165 cactttggttatcacagtaaaggacagga 193  Q
    ||||||| |||||||| ||||| ||||||    
T  8838321 cactttgattatcacaataaagcacagga 8838293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 220
Target Start/End: Complemental strand, 55312357 - 55312202
Alignment:
Q  65 ttgaagaggccagcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatgg 164  Q
    ||||||| ||| || || || |||||||| ||||| || || ||||||||||| || |||||||||||| | || || |||||||  |||||||| || |    
T  55312357 ttgaagatgcctgcctgtagcttttccctgacaatatggcagtcaatttcaagatgtttagttctttcatgaaaaacaggatttgatgcaatgtgcatag 55312258  T
Q  165 cactttggttatcacagtaaaggacaggagctttgacacattgtaattgtaaatct 220  Q
    ||||||| |||||||| ||||| ||||||  ||  |||||||| | ||||||||||    
T  55312257 cactttgattatcacaataaagcacaggaagttgaacacattgaacttgtaaatct 55312202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 4642826 - 4642935
Alignment:
Q  77 gcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttat 176  Q
    ||||| || ||||| ||||| | |||||||||||| ||||||||||| ||||||||| | || ||| | || || |||||||| |  |||||||||||||    
T  4642826 gcttgtagcttttctctaaccaagtgacaatcaatctcaaggtgcttggttctttcatgaaatactcggttggctgcaatgtgcaaagcactttggttat 4642925  T
Q  177 cacagtaaag 186  Q
    ||||||||||    
T  4642926 cacagtaaag 4642935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 17698490 - 17698432
Alignment:
Q  101 tgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtg 159  Q
    ||||| ||||||||||| || ||||| || ||| | |||||||||||||||||||||||    
T  17698490 tgacagtcaatttcaagatgtttagtcctctcatgaaacactggatttgcagcaatgtg 17698432  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 17477431 - 17477495
Alignment:
Q  83 agtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatt 147  Q
    ||||| || ||||||||||| ||||||||||  || ||||| ||||||||| |||| ||||||||    
T  17477431 agtttctctctaacaatgtggcaatcaattttcagatgcttggttctttcatggaaaactggatt 17477495  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 26464698 - 26464807
Alignment:
Q  77 gcttgcagtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttat 176  Q
    ||||| |||||||||||||| | |||||| |||||||| || || || || |||||| | |||||||||||||| |||||||| |  ||||| |||||||    
T  26464698 gcttgtagtttttccctaaccaagtgacagtcaatttccagatgttttgtcctttcatgaaacactggatttgctgcaatgtgaagagcactctggttat 26464797  T
Q  177 cacagtaaag 186  Q
    |||| |||||    
T  26464798 cacaataaag 26464807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 15451047 - 15450965
Alignment:
Q  98 atgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttatcaca 180  Q
    |||||||||||||| || | |||||| ||||||||| | || |||||||| ||||| ||||| |  ||||||||||| |||||    
T  15451047 atgtgacaatcaatgtccaagtgcttggttctttcatgaaaaactggattagcagctatgtgaagtgcactttggttgtcaca 15450965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 20238075 - 20238173
Alignment:
Q  85 tttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttatcacagta 183  Q
    ||||||||||||||||||||| ||||| || | ||| ||||| | |||| | || || ||||| || ||||||||||  ||||| ||||| ||||||||    
T  20238075 tttttccctaacaatgtgacagtcaatatctaagtgtttagtccgttcatgaaatacaggattagcggcaatgtgtaaagcactatggttgtcacagta 20238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 26492450 - 26492341
Alignment:
Q  111 tttcaaggtgcttagttctttcacggaacactggatttgcagcaatgtgtatggcactttggttatcacagtaaaggacaggagctttgacacattgtaa 210  Q
    ||||||| || |||||||||||| | || || | |||||  |||||||| || |||||||| |||||||| ||||| ||||||  ||  |||||||| |     
T  26492450 tttcaagatgtttagttctttcatgaaaaacagaatttgatgcaatgtgcatagcactttgattatcacaataaagcacaggaagttgaacacattgaac 26492351  T
Q  211 ttgtaaatct 220  Q
    ||||||||||    
T  26492350 ttgtaaatct 26492341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 333
Target Start/End: Complemental strand, 2361803 - 2361682
Alignment:
Q  212 tgtaaatctttgatgaaataaagcaaccattgtagcgcacaggtagcagaagccaagacacaatattcagcttcagatgaagatctagagaccgtaacct 311  Q
    |||||||||||||  | ||| || | |||||||||  |||| ||||| ||||||||  | | |||||||||||||||||||||||||||||| || |  |    
T  2361803 tgtaaatctttgagaagatatagaatccattgtagttcacaagtagctgaagccaatgccctatattcagcttcagatgaagatctagagactgtgattt 2361704  T
Q  312 acttctttgttctccaagagat 333  Q
      ||||||||||||||||||||    
T  2361703 gtttctttgttctccaagagat 2361682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 18008389 - 18008321
Alignment:
Q  125 gttctttcacggaacactggatttgcagcaatgtgtatggcactttggttatcacagtaaaggacagga 193  Q
    ||||||||| ||||||||||||||| ||| ||||| || | ||||||||||||||| || | |||||||    
T  18008389 gttctttcatggaacactggatttgaagctatgtgaattgaactttggttatcacaatagatgacagga 18008321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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