View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_39 (Length: 302)
Name: NF12125_low_39
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_39 |
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| [»] scaffold0289 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 15680284 - 15680528
Alignment:
| Q |
2 |
gaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccact |
101 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15680284 |
gaatcttcatcacacgtgattccgaaccagctgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagacttgctttccact |
15680383 |
T |
|
| Q |
102 |
tcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaagggttgttagttatgag |
201 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
15680384 |
tcaacaaagcacttgcttctctactttgtaaagtggaagaagtagatgaaattgttagggaaaaaccaacaattgaagaagaagggttcat---tatgag |
15680480 |
T |
|
| Q |
202 |
tggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatg |
250 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15680481 |
tggacaaaagtacattgagaaaaacagccaaaa-agtacacacttcatg |
15680528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 15672070 - 15672343
Alignment:
| Q |
1 |
ggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccac |
100 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15672070 |
ggaatcttcatcacacgtaattcccaaccagttgcatgaaatattgtcattccatgaagataacaaagcttggctttggttatcaagacttgctttccac |
15672169 |
T |
|
| Q |
101 |
ttcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaagggttgttagttatga |
200 |
Q |
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| T |
15672170 |
ttcaacaacgcacttgcttctctactttgtaaagtagaagaagcagatgaaattgtt--ggaaaaaccaacaattgaagaagg------gttagttatga |
15672261 |
T |
|
| Q |
201 |
gtggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatgacttgcagcattggaaatatggacaccatgga |
282 |
Q |
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| T |
15672262 |
gtggacaaaagtacattgagaaaaacagccaaaagagtacacacttcatggtctgaagcgttggaaatatggacaccatgga |
15672343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 15666784 - 15667035
Alignment:
| Q |
1 |
ggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
15666784 |
ggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaaacttggctttggttgtcaagacttgctttccac |
15666883 |
T |
|
| Q |
101 |
ttcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaag-----ggttgttagt |
195 |
Q |
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| T |
15666884 |
ttcaacaaagcacttgcttctttgctttgaacagtggatgaagctgcagaaatagtaaaggaagaaccaaccacagaagaagaagaagaagg--gttagt |
15666981 |
T |
|
| Q |
196 |
tatgagtggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcat |
249 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15666982 |
tatgagtgcacaaaagtacattgagaaaaacagccaaaagtgtacacacttcat |
15667035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 16023069 - 16022935
Alignment:
| Q |
1 |
ggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccac |
100 |
Q |
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||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||| |
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| T |
16023069 |
ggaatcttcattacaagaaattccaagccagttgcatgaattattgccactccatgaagataacaaagcttggctatggttgtcaagacttgttttccac |
16022970 |
T |
|
| Q |
101 |
ttcaacaaagcacttgtttctctactttgtaaagt |
135 |
Q |
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|||| ||||||||||| |||||||||||||||||| |
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| T |
16022969 |
ttcagcaaagcacttgcttctctactttgtaaagt |
16022935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 14603579 - 14603464
Alignment:
| Q |
20 |
attccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttcaacaaagcacttgttt |
119 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || |
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| T |
14603579 |
attccaagccagttgcatgaattattgccactccatgaagataacaaagcttggctatggttgtcaagacttattttccacttcaacaaagcacttgctt |
14603480 |
T |
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| Q |
120 |
ctctactttgtaaagt |
135 |
Q |
| |
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|||||||||||||||| |
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| T |
14603479 |
ctctactttgtaaagt |
14603464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 16170820 - 16170724
Alignment:
| Q |
20 |
attccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttcaacaaagcacttg |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||| ||||||||||||||||||||||||| |
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| T |
16170820 |
attccaagccagttgcatgaattattgccactccatgaagatagcaaagtttggctatggttgtcaagacttgctttccacttcaacaaagcacttg |
16170724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 16101142 - 16101053
Alignment:
| Q |
20 |
attccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttcaacaaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||| |||||||| |
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| T |
16101142 |
attccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttgattgtcaaggcttgctttccacatcaacaaa |
16101053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 17847248 - 17847124
Alignment:
| Q |
4 |
atcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttc |
103 |
Q |
| |
|
|||||||||||| || ||||| | ||||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||| | |||||| ||| |
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| T |
17847248 |
atcttcatcacatgtaattcccatccagttgcatgaattgttgccattccatgaagataacaaagcttggctttctatttcaaggttgcttttccatttc |
17847149 |
T |
|
| Q |
104 |
aacaaagcacttgtttctctacttt |
128 |
Q |
| |
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||||||| ||||| ||||||||||| |
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| T |
17847148 |
aacaaagaacttgcttctctacttt |
17847124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 19652 - 19907
Alignment:
| Q |
1 |
ggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccac |
100 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||| ||| ||||| |
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| T |
19652 |
ggaatcttcaccacatgtgattccaaaccagttgcatgagttattgccactccatgaagatagcaaagtttggctttggttgtcaagacttgctatccac |
19751 |
T |
|
| Q |
101 |
ttcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaag--------ggttgtt |
192 |
Q |
| |
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|||||||||||||||| |||| | ||||| | |||||| |||| | | ||| || | |||| |||||| | |||||||||| || ||| |
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| T |
19752 |
ttcaacaaagcacttgcttctttgctttgaacagtggatgaagctgcagaaatagtaaaggaagaaccaaacacagaagaagaagaagaagaagg--gtt |
19849 |
T |
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| Q |
193 |
agttatgagtggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatg |
250 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
19850 |
agttatgagtgtacaaaagtacattgaggaaaacagccaaaagtgtacacacttcatg |
19907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 14534755 - 14534827
Alignment:
| Q |
40 |
attattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttcaacaaagca |
112 |
Q |
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|||||||||| |||||||||| | |||||| | ||| ||||| ||||| || |||||||||||||||| |||| |
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| T |
14534755 |
attattgccaatccatgaagagagcaaagcattgctatggttgtcaaggcttgctttccacttcaacagagca |
14534827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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