View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_43 (Length: 287)
Name: NF12125_low_43
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 39810321 - 39810082
Alignment:
| Q |
12 |
ctgtgagaatacattgattattattaactaaatgagagggacaaaagaatttgttcatatgtatgaatatcaagtacctgtccaccagtatcagaatctc |
111 |
Q |
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| T |
39810321 |
ctgtgagaatacattgattattattaactaaatgagagggacaaaagaatttgttcatatgtatgaatatcaagtacctgtccaccagtatcagaatctc |
39810222 |
T |
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| Q |
112 |
taccaagctccatgttttctcctcgtaccaatccatgcaaactgtataaaagccaaggccatgatcattgatcaaacattgcatttacatacatatgatc |
211 |
Q |
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| T |
39810221 |
taccaagctccatgttttctcctcgtaccaatccatgcaaactgtataaaagccaaggccatg-------atcaaacattgcatttacatacatatgatc |
39810129 |
T |
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| Q |
212 |
atagctttcacaatagtaatattaggaaagatatcaattaataataa |
258 |
Q |
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| T |
39810128 |
atagctttcacaatagtaatattaggaaagatatcaattaataataa |
39810082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 15797636 - 15797561
Alignment:
| Q |
81 |
tcaagtacctgtccaccagtatcagaatctctaccaagctccatgttttctcctcgtaccaatccatgcaaactgt |
156 |
Q |
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| T |
15797636 |
tcaaatacctgtccaccggtgtcagaatctcgaccaagctccatgttttctcccctaaccaatccatgcaaactgt |
15797561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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