View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_5 (Length: 583)
Name: NF12125_low_5
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 21 - 578
Target Start/End: Original strand, 48729828 - 48730385
Alignment:
| Q |
21 |
actgacatgtgcaggattgtgttgcctgcttcatcctcccaattcagaacccgtttttccttgtggtgagaacgtctgtggcatgtccttcgaagccaac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48729828 |
actgacatgtgcaggattgtgttgcctgcttcatcctcccaattcagaacccgtttttccttgtggtgagaacgtctgtggcatgtccttcgaagccaac |
48729927 |
T |
|
| Q |
121 |
caagcaagatctcaagaacatgaaactgcttatatttcacagcaatatgcagagcagtctcacttcgaactgtaacatcttcaatacaacctggacaaac |
220 |
Q |
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| T |
48729928 |
caagcaagatctcaagaacatgaaactgcttatatttcacagcaatatgcagagcagtctcacttcgaactgtaacatcttcaatacaacctggacaaac |
48730027 |
T |
|
| Q |
221 |
agacaggaattttactacaagatcaaagtttccagtttgagtagcaatatgcaatggagttagaccctctatccctttgactcggacaagatctttatta |
320 |
Q |
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| T |
48730028 |
aaacaggaattttactacaagatcaaagtttccagtttgagtagcaatatgcaatggagttagaccctctctccctttgactcggacaaggtctttatta |
48730127 |
T |
|
| Q |
321 |
atatctacaaagcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggtt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730128 |
atatctacaaagcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggtt |
48730227 |
T |
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| Q |
421 |
ttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaattatagcgttctaagat |
520 |
Q |
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| T |
48730228 |
ttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaattatagcgttctaagat |
48730327 |
T |
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| Q |
521 |
gtaaggatccatttgaatcagtttgtatagcaagtctatatctcccatctgtgctgct |
578 |
Q |
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| T |
48730328 |
gtaaggatcgatttgaatcagtttgaatagcaagtctatatctcccatttgtgctgct |
48730385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 354 - 504
Target Start/End: Complemental strand, 4819091 - 4818941
Alignment:
| Q |
354 |
ttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtat |
453 |
Q |
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| T |
4819091 |
ttgttttgcatagcaagatggataggactgaatccttgttgatttagcttccaagcaaatgaaggttttaacttcataatctcggaggcaaattggagat |
4818992 |
T |
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| Q |
454 |
gtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
504 |
Q |
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| || || ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4818991 |
gacccatagatgcagcaatatgcaaaggagtttcaacaaatggtattaaat |
4818941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 504
Target Start/End: Original strand, 31040743 - 31040851
Alignment:
| Q |
396 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatg |
495 |
Q |
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||||| ||||| |||||||||||||| | ||||||||| ||||||||||| |||||| || |||||| ||||||| |||||| |||||||||| |
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| T |
31040743 |
tttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgaacatgtcccatagatgcagctatatgcagaggagtttcaacaaatg |
31040842 |
T |
|
| Q |
496 |
gtattaaat |
504 |
Q |
| |
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| T |
31040843 |
gaattaaat |
31040851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 445
Target Start/End: Original strand, 31075952 - 31076001
Alignment:
| Q |
396 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
445 |
Q |
| |
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||||| ||| |||||||||||||||| | ||||||||| ||||||||||| |
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| T |
31075952 |
tttagcttcaaagcaaatgaaggtttcaatctcataatttcagtggcaaa |
31076001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 504
Target Start/End: Complemental strand, 28865196 - 28865156
Alignment:
| Q |
464 |
tgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
504 |
Q |
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| T |
28865196 |
tgcagcgatatgtaaaggagtttcaacaaatggtattaaat |
28865156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 500
Target Start/End: Complemental strand, 30648044 - 30648008
Alignment:
| Q |
464 |
tgcagcaatatgcaaaggagtatcaacaaatggtatt |
500 |
Q |
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| T |
30648044 |
tgcagcaatatgtaaaggagtttcaacaaatggtatt |
30648008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 445
Target Start/End: Original strand, 26087519 - 26087599
Alignment:
| Q |
365 |
agcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
445 |
Q |
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||||||||| |||||||||| ||| | || ||||||||||||||| |||||||||| | ||||||| ||||||||||| |
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| T |
26087519 |
agcaagatggatgggactgaatccttgctgatttagtttccaagcatatgaaggtttcaaattcataatttcagtggcaaa |
26087599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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