View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_50 (Length: 256)
Name: NF12125_low_50
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 34340443 - 34340688
Alignment:
| Q |
1 |
ttcgctcacacgccggaacagctccgtcttaacgttcagcagagtccatcttcctcacggaatgttaattcgcctgattcgtatgacggttctccgttac |
100 |
Q |
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| T |
34340443 |
ttcgctcacacgccggaacagcttcgtcttaacgttcagcagagtccatcttcctcacggagtgttaattcgcctgattcgtatgacggttctccgttac |
34340542 |
T |
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| Q |
101 |
gacaaatggttactataacgaccccgccagaatctccaccgatgtcaccgatggcgagcgagatggtggcgtcgttacggaatttacaattgggtcggat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34340543 |
gacaaatggttactataacgacgccgccagaatctccaccgatgtcaccgatggcgagcgagatggtggcgtcgttacggaatttacaattgggtcggat |
34340642 |
T |
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| Q |
201 |
gaaaactatgccaattaacagaaatgttacaattgggtcacaggtt |
246 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
34340643 |
gaaaactatgccaattaatagaaatgttacaattgggtcaccggtt |
34340688 |
T |
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