View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12125_low_54 (Length: 239)

Name: NF12125_low_54
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12125_low_54
NF12125_low_54
[»] chr4 (7 HSPs)
chr4 (1-225)||(9594350-9594577)
chr4 (1-219)||(9582563-9582781)
chr4 (1-219)||(9588258-9588476)
chr4 (1-227)||(9603151-9603380)
chr4 (13-225)||(9568477-9568689)
chr4 (1-219)||(9573598-9573816)
chr4 (20-222)||(54295670-54295872)
[»] chr6 (6 HSPs)
chr6 (56-178)||(29144582-29144704)
chr6 (56-175)||(23216616-23216735)
chr6 (50-113)||(29299359-29299422)
chr6 (134-178)||(29012262-29012306)
chr6 (132-180)||(29130682-29130730)
chr6 (136-174)||(34279157-34279195)
[»] chr7 (1 HSPs)
chr7 (50-222)||(42445613-42445785)
[»] scaffold0134 (1 HSPs)
scaffold0134 (56-144)||(16929-17017)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 9594577 - 9594350
Alignment:
Q  1 ttacgacgggggatctctgcttctaaaggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaatgttaaattagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594577 ttacgacgggggatctctgcttctaaaggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaatgttaaattagat 9594478  T
Q  101 ttctcaaatccatatgcaaaccgtttc---aaatttcgtatttttggttttggtagtattaatgggacattttgtctctatcaagattattattatggaa 197  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594477 ttctcaaatccatatgcaaaccgtttcaaaaaatttcgtatttttggttttggtagtattaatgggacattttgtctctatcaagattattattatggaa 9594378  T
Q  198 acactgtattgtggaacccatctacaca 225  Q
    ||||||||||||||||||||||||||||    
T  9594377 acactgtattgtggaacccatctacaca 9594350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 9582781 - 9582563
Alignment:
Q  1 ttacgacgggggatctctgcttctaaaggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaatgttaaattagat 100  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  9582781 ttacgatgggggatctctgctcctaagggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaaagttcaattagat 9582682  T
Q  101 ttctcaaatccatatgcaaaccgtttcaaatttcgtatttttggttttggtagtattaatgggacattttgtctctatcaagattattattatggaaaca 200  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || |    
T  9582681 ttctcaaatgcatatgcagaccgtttcaaatttcgtatttttggctttggtagtattaatggcacattttgtctctatcaagattattattatggcaaaa 9582582  T
Q  201 ctgtattgtggaacccatc 219  Q
    || ||||||||||||||||    
T  9582581 ctctattgtggaacccatc 9582563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 9588476 - 9588258
Alignment:
Q  1 ttacgacgggggatctctgcttctaaaggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaatgttaaattagat 100  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  9588476 ttacgatgggggatctctgctcctaagggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaaagttcaattagat 9588377  T
Q  101 ttctcaaatccatatgcaaaccgtttcaaatttcgtatttttggttttggtagtattaatgggacattttgtctctatcaagattattattatggaaaca 200  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || |    
T  9588376 ttctcaaatgcatatgcagaccgtttcaaatttcgtatttttggctttggtagtattaatggcacattttgtctctatcaagattattattatggcaaaa 9588277  T
Q  201 ctgtattgtggaacccatc 219  Q
    || ||||||||||||||||    
T  9588276 ctctattgtggaacccatc 9588258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9603380 - 9603151
Alignment:
Q  1 ttacgacgggggatctctgcttctaaaggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaatgttaaattagat 100  Q
    ||||||||||  |||||| || |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  9603380 ttacgacgggacatctctcctcctaagggatttcaaacttggtcaagacgttttctattctatttctggtgaaaggtttgagaacaaagttaaaatagat 9603281  T
Q  101 ttctcaaatccatatg---caaaccgtttcaaatttcgtatttttggttttggtagtattaatgggacattttgtctctatcaagattattattatggaa 197  Q
    ||| ||||| ||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |    
T  9603280 ttcccaaattcatatgatgcaaaccgttttaaatttcgtatttttggttttggtagtattaatgggacattttgtctctatcaagcttattattattgca 9603181  T
Q  198 acactgtattgtggaacccatctacacagg 227  Q
    | ||||||||||||||||||||||||||||    
T  9603180 atactgtattgtggaacccatctacacagg 9603151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 9568477 - 9568689
Alignment:
Q  13 atctctgcttctaaaggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaatgttaaattagatttctcaaatcca 112  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||  ||||||||||| ||||||||    
T  9568477 atctcttcttctaaaggatttagaacttggtaaagaagttttctattctatttatggtgaaaggtttgagaacaaagtacaattagatttcacaaatcca 9568576  T
Q  113 tatgcaaaccgtttcaaatttcgtatttttggttttggtagtattaatgggacattttgtctctatcaagattattattatggaaacactgtattgtgga 212  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||| |||| || ||| |||||||||    
T  9568577 tttgcaaaccgtttcaattttcgtatttttggttttggtagtattaatggcacactttgtctccatcaagatgattataatggcaaaactctattgtgga 9568676  T
Q  213 acccatctacaca 225  Q
    |||||||||||||    
T  9568677 acccatctacaca 9568689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 9573598 - 9573816
Alignment:
Q  1 ttacgacgggggatctctgcttctaaaggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaatgttaaattagat 100  Q
    |||||| |||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||  | || ||||||    
T  9573598 ttacgatggggcatctttgctcctaaaggattttgaacttggtaaagacgttttctattctatttatggtgaaaggtttgagatcaaattaaagttagat 9573697  T
Q  101 ttctcaaatccatatgcaaaccgtttcaaatttcgtatttttggttttggtagtattaatgggacattttgtctctatcaagattattattatggaaaca 200  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| |  ||||||||| || |    
T  9573698 ttctcaaatccacatgcaaaccgtttcaagtttcgtatttttggttttggtagtattaatggcacattttgtctccatcaaggtggttattatggcaaaa 9573797  T
Q  201 ctgtattgtggaacccatc 219  Q
    || ||| ||||||||||||    
T  9573798 ctctatcgtggaacccatc 9573816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 54295872 - 54295670
Alignment:
Q  20 cttctaaaggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaatgttaaattagatttctcaaatccatatgcaa 119  Q
    ||||||| |||||| ||| | |||||| ||| ||||||||| |||| ||||||||||||| | || || ||||||||||||||| ||||||||| |||||    
T  54295872 cttctaagggattttgaattcggtaaaaacgatttctattccatttttggtgaaaggtttcaaaataaagttaaattagatttcccaaatccatttgcaa 54295773  T
Q  120 accgtttcaaatttcgtatttttggttttggtagtattaatgggacattttgtctctatcaagattattattatggaaacactgtattgtggaacccatc 219  Q
    ||| ||   | |||  |||| |||||||||||||| ||||||| | | |||||||| || | ||| |||||||||| || |||||||||||||| |||||    
T  54295772 accattgtgattttgttattcttggttttggtagtgttaatggcataatttgtctccatgaggatgattattatggcaaaactgtattgtggaatccatc 54295673  T
Q  220 tac 222  Q
    |||    
T  54295672 tac 54295670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 29144582 - 29144704
Alignment:
Q  56 tattctatttctggtgaaaggtttgagaacaatgttaaattagatttctcaaatccatatgcaaaccgtttcaaatttcgtatttttggttttggtagta 155  Q
    |||||| |||| ||||| ||||||||||| || || ||||||||||| | ||||||||  |||||||  | ||| |||||||||||||||||||||||||    
T  29144582 tattctctttcgggtgagaggtttgagaataaggtgaaattagattttttaaatccattcgcaaacctatacaattttcgtatttttggttttggtagta 29144681  T
Q  156 ttaatgggacattttgtctctat 178  Q
    ||||||| | | |||||||||||    
T  29144682 ttaatggtatactttgtctctat 29144704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 23216735 - 23216616
Alignment:
Q  56 tattctatttctggtgaaaggtttgagaacaatgttaaattagatttctcaaatccatatgcaaaccgtttcaaatttcgtatttttggttttggtagta 155  Q
    |||||| ||||||| || | ||||||||| || || |||||||||||||||||||||||||||||||  ||||| ||||  ||||||||  ||||||||     
T  23216735 tattctctttctggggagacgtttgagaataaggtcaaattagatttctcaaatccatatgcaaaccaattcaattttcaaatttttggggttggtagtg 23216636  T
Q  156 ttaatgggacattttgtctc 175  Q
    ||||||| | | ||||||||    
T  23216635 ttaatggcatactttgtctc 23216616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 29299359 - 29299422
Alignment:
Q  50 gttttctattctatttctggtgaaaggtttgagaacaatgttaaattagatttctcaaatccat 113  Q
    |||||||||||| || ||||||| | ||||||||| || || ||||||||||||||||||||||    
T  29299359 gttttctattctcttgctggtgagaagtttgagaaaaaagtcaaattagatttctcaaatccat 29299422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 29012262 - 29012306
Alignment:
Q  134 cgtatttttggttttggtagtattaatgggacattttgtctctat 178  Q
    |||||||||||||||||||||||||| || ||| |||||||||||    
T  29012262 cgtatttttggttttggtagtattaacggcacactttgtctctat 29012306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 29130682 - 29130730
Alignment:
Q  132 ttcgtatttttggttttggtagtattaatgggacattttgtctctatca 180  Q
    ||||||| |||||||| |||||||||||||| |||||||||||| ||||    
T  29130682 ttcgtatctttggtttcggtagtattaatggcacattttgtctccatca 29130730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 34279195 - 34279157
Alignment:
Q  136 tatttttggttttggtagtattaatgggacattttgtct 174  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  34279195 tattttgggttttggtagtattaatgggacactttgtct 34279157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 42445613 - 42445785
Alignment:
Q  50 gttttctattctatttctggtgaaaggtttgagaacaatgttaaattagatttctcaaatccatatgcaaaccgtttcaaatttcgtatttttggttttg 149  Q
    ||||| |||| | |||||||| | ||||| ||||| || || |||||||||| ||||||||||| |||| | |  ||  | |||||||||||||||||||    
T  42445613 gttttatattttctttctggtcagaggttcgagaataaggtcaaattagattactcaaatccatctgcacatccatttgattttcgtatttttggttttg 42445712  T
Q  150 gtagtattaatgggacattttgtctctatcaagattattattatggaaacactgtattgtggaacccatctac 222  Q
    ||||||||||||| ||| | |||||| || || || || ||||||| || | |||||||||||| ||||||||    
T  42445713 gtagtattaatggcacactctgtctccatgaatatgataattatggcaaaattgtattgtggaatccatctac 42445785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 17017 - 16929
Alignment:
Q  56 tattctatttctggtgaaaggtttgagaacaatgttaaattagatttctcaaatccatatgcaaaccgtttcaaatttcgtatttttgg 144  Q
    |||||| |||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||  ||||| ||||  ||||||||    
T  17017 tattctctttctggtgagaggtttgagaataaggtcaaattagatttctcaaatccatatgcaaaccaattcaattttcaaatttttgg 16929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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