View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_55 (Length: 236)
Name: NF12125_low_55
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_55 |
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| [»] scaffold0174 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 4730396 - 4730183
Alignment:
| Q |
5 |
gaaagcgtcgacggaaaactgatgaggaagcgcagggatgatcggttgccggaagagaaaaggcacnnnnnnnncccctaaggaaacgccaacgagaggc |
104 |
Q |
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| T |
4730396 |
gaaagcgtcgacggaaaactgatgaggaagcgcagggatgatcggttgctggaagagaaaaggcacaaaaaa--cccctaaggaaacgccgacgagaggc |
4730299 |
T |
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| Q |
105 |
acaacgacggcggaaaaacaacggtggtacggccaaatggcgtcgcaccaccagcattaaggttacatcttgttttcaaggtttagatgataggggaaga |
204 |
Q |
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| T |
4730298 |
acaacgacgacgaaaaaacaacggtggtacggccaaacgacgtcgcaccaccagcatgaaggttacatcttgttttcaaggtttggatgataggggaaga |
4730199 |
T |
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| Q |
205 |
gaaatgggatcggagc |
220 |
Q |
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| T |
4730198 |
gaaatgggatcggagc |
4730183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 30273 - 30059
Alignment:
| Q |
5 |
gaaagcgtcgacggaaaactgatgaggaagcgcagggatgatcggttgccggaagagaaaaggcacnnnnnnnnccccta-aggaaacgccaacgagagg |
103 |
Q |
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| T |
30273 |
gaaagcgtcgacggagaactgatgaggaagcgcagggatgatcggctgccggaagagaaaaggcacaaaaaaa--ccctacagggaacgccgacgagagg |
30176 |
T |
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| Q |
104 |
cacaacgacggcggaaaaacaacggtggtacggccaaatggcgtcgcaccaccagcattaaggttacatcttgttttcaaggtttagatgataggggaag |
203 |
Q |
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| T |
30175 |
cacaacgacggcggctaaacaacggtggtacggccaaacgtcgtcgcaccaccagcatgaaggttacatcttgttttcaaggtttggatgataggggaag |
30076 |
T |
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| Q |
204 |
agaaatgggatcggagc |
220 |
Q |
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| T |
30075 |
agaaatgggatcggagc |
30059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 9733527 - 9733434
Alignment:
| Q |
127 |
ggtggtacggccaaatggcgtcgcaccaccagcattaaggttacatcttgttttcaaggtttagatgataggggaagagaaatgggatcggagc |
220 |
Q |
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| T |
9733527 |
ggtggtacggctaaacgacatcgcaccaccagcagggaggttacatcttatgaacaaggtttggatgataggggaaaagaaatgggatcggagc |
9733434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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