View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_58 (Length: 224)
Name: NF12125_low_58
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_58 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 29121830 - 29122046
Alignment:
| Q |
8 |
aacctgtgtaaaacttaataagaagccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaatca |
107 |
Q |
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| T |
29121830 |
aacctgtgtaaaacttaataagaaaccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaatca |
29121929 |
T |
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| Q |
108 |
tgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatgcatctggtgatgacatattgt |
207 |
Q |
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| T |
29121930 |
tgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatctactctgcttcgatgcatctggtgatgacatattgt |
29122029 |
T |
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| Q |
208 |
tatctgttattgaatct |
224 |
Q |
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| T |
29122030 |
tatctgttattgaatct |
29122046 |
T |
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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 6732356 - 6732541
Alignment:
| Q |
9 |
acctgtgtaaaacttaataa--gaagccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaatc |
106 |
Q |
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| T |
6732356 |
acctatgtaaaacttaataaaagaagccaaaattgccttccaatatttgattcttgtgactcttgtcatttacaacttgctccatttcttccatcaagtc |
6732455 |
T |
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| Q |
107 |
atgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatgcatctg |
192 |
Q |
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| T |
6732456 |
atgaaagtttatattcctttcacctttctcaaggtacttgtcaaagcacctattcatttgatatctgctctgtttcgatacatctg |
6732541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 6528844 - 6528766
Alignment:
| Q |
90 |
atttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggt |
168 |
Q |
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| T |
6528844 |
atttcttccatcaagtcatgaagttttatggttcttctacctctctaaaggaactttgcaaagcacttcttcgtatggt |
6528766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 32773610 - 32773507
Alignment:
| Q |
87 |
tccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatg |
186 |
Q |
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|||| ||||||||| || ||||||| ||| ||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||||| ||||| | || ||| |
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| T |
32773610 |
tccacttcttccattaattcatgaagtttcatgattcttctccctttttctaggtacttagcaaagcacttcttcatatggtatctactcttcctcaatg |
32773511 |
T |
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| Q |
187 |
catc |
190 |
Q |
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|||| |
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| T |
32773510 |
catc |
32773507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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