View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_7 (Length: 559)
Name: NF12125_low_7
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 368 - 538
Target Start/End: Original strand, 7937611 - 7937782
Alignment:
| Q |
368 |
cttagacggctacatactgactttcttgtgaccaaatgtacttgttgccttgcttcgttttctcttcatggaat-cgattggtggtagtggtgataactt |
466 |
Q |
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| T |
7937611 |
cttagacgactacgtactgactttcttgtgaccaaatgtacttgttgccatacttcgttttctcttcatgtaattcgattgctggtagtggtgataactt |
7937710 |
T |
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| Q |
467 |
gattttaatctcatctttcacaaaagtgatgtgttggtataatcgttatataaggcacgacgataatattat |
538 |
Q |
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| T |
7937711 |
gattttaatctcatccttcacaaaagtgatgtgttggtataatcgttatataaggcacgacgataatattat |
7937782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 174 - 371
Target Start/End: Original strand, 7937311 - 7937502
Alignment:
| Q |
174 |
aataaaatgtttactcctttggattaatgtttagtgcttatagtggtgaagaacaattaaacatatgtgaacctaattaatgtctgttaggatcgactct |
273 |
Q |
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| T |
7937311 |
aataaaatgtttactcctttggattaatgtttagtgcttatagtggtgaagaacaattaaacacatgtgaacctaattaatgtctcttagaatcgactct |
7937410 |
T |
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| Q |
274 |
aaatggatcagacaacttaattagttcaaacaaaacataatatcacatgtgatttttattttgaataggatatctttttacttcaaaatcaactctta |
371 |
Q |
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| T |
7937411 |
aaacagatcagacaac----ttagttcaaacaaaacata--attgcatgtgatttttattttgaatatgatatttttttgcctcaaaatcaactctta |
7937502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 7937146 - 7937238
Alignment:
| Q |
14 |
gtgcatggcccactgtttagtaacagtacaca--gctaagaatgatagtatatttttggtggagaaatggaaaattagttgttattttgttggcg |
106 |
Q |
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| T |
7937146 |
gtgcatggcccactgtttagtaacggtacacacagctaagaatga--gtatatttttggtggagaaatggaaaattagttgttattttgttggcg |
7937238 |
T |
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