View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12125_low_8 (Length: 549)
Name: NF12125_low_8
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12125_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 401729 - 402086
Alignment:
| Q |
19 |
aaataagcttaattttatcgttcaagttnnnnnnnccaacctttctgcaagagaaactgacgttggtatgatgtattgcaaaccgactgacaacatccac |
118 |
Q |
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| T |
401729 |
aaataagcttaattttatcgttcaagttaaaaaaaccaacctttctgcaagagaaactgacattggtatgatgtattgcaaaccgactgacaacatccac |
401828 |
T |
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| Q |
119 |
tatctttgagtaatcatctgaagaattttgtagtgtcttcttccttgcagccatattatagaatagattctcaacctgacagcacatgcgcaggcaggca |
218 |
Q |
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| T |
401829 |
tatctttgagtaatcatctgaagaattttgtagtgtcttcttccttgcagccatattatagaatagattctcaacctgacagca--------ggcaggca |
401920 |
T |
|
| Q |
219 |
caataatctcaatcaattacatgcaaacatttgattccaattgggtgaatcagtaatctagtccttgaaattgtaagagtcaagcaatttagtctctgaa |
318 |
Q |
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| T |
401921 |
caataatctcaatcaattacatgcaaacatttgattccaattgggtgaatcactaatctagtccttgaaattgtaagagtcaagcaatttagtctctgaa |
402020 |
T |
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| Q |
319 |
attaacgtaatttcaaaatgatccttaaaattaaaaattttagtcacattatcaggaaccaaattg |
384 |
Q |
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| T |
402021 |
attaatgtcatttcaaaatgatccttaaaattaaaaatttcagtcacattatcaggaaccaaattg |
402086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 374 - 539
Target Start/End: Original strand, 402131 - 402296
Alignment:
| Q |
374 |
gaaccaaattgcatgtcacctacaatttcagagattgaattaatcaaaataaaacatcctaataataaccttcaatgtcttcattatatagaccattaat |
473 |
Q |
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| T |
402131 |
gaaccatattgcatgtcacctacaatttcagagattgaattaatcaaaataaaacatcctaataataaccttcaatgtcttcattatatagaccattaat |
402230 |
T |
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| Q |
474 |
taaaatcaaactttaatgacaatatagtataaagataacctatagcataccattatctgtgctcct |
539 |
Q |
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| T |
402231 |
taaaatcaaactttaatgacaatatagtataaagataacctatagcataccattatctgtgttcct |
402296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 34618382 - 34618350
Alignment:
| Q |
279 |
gtccttgaaattgtaagagtcaagcaatttagt |
311 |
Q |
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| T |
34618382 |
gtccttgaaattgtaagagtcaagcaatttagt |
34618350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 34745819 - 34745787
Alignment:
| Q |
279 |
gtccttgaaattgtaagagtcaagcaatttagt |
311 |
Q |
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| T |
34745819 |
gtccttgaaattgtaagagtcaagcaatttagt |
34745787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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